View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0321_high_11 (Length: 258)
Name: NF0321_high_11
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0321_high_11 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0408 (1 HSPs) |
| | |
|
| [»] scaffold1043 (1 HSPs) |
| | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
| [»] scaffold0364 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
| [»] scaffold0385 (1 HSPs) |
| | |
|
| [»] scaffold0207 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 16068172 - 16067944
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||| |||| |||||| |
|
|
| T |
16068172 |
catcatcattttctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa |
16068073 |
T |
|
| Q |
122 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct |
221 |
Q |
| |
|
||||| |||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16068072 |
gattctcccccttacatctaatttatccccttgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct |
16067973 |
T |
|
| Q |
222 |
aaagaataacatcaatgcttattcatctc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16067972 |
aaagaataacatcaatgcttattcatctc |
16067944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 9693088 - 9692989
Alignment:
| Q |
37 |
atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
|||||| ||| |||||||||| |||||| | |||||||||||||||||||||| || ||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
9693088 |
atcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttac |
9692989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 143102 - 143331
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| ||| |
|
|
| T |
143102 |
catcatcaatctctcatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccttcccatcatagattaagataccataaagtgaaaa |
143201 |
T |
|
| Q |
122 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| |||||||||||||||| |
|
|
| T |
143202 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatct |
143301 |
T |
|
| Q |
222 |
aaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
143302 |
aaagaatgacatcaatgcttattcatctca |
143331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0408 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0408
Description:
Target: scaffold0408; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 14984 - 15205
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| || |||||||| |
|
|
| T |
14984 |
catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa |
15083 |
T |
|
| Q |
122 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct |
221 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |
|
|
| T |
15084 |
gattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatct |
15183 |
T |
|
| Q |
222 |
aaagaataacatcaatgcttat |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15184 |
aaagaataacatcaatgcttat |
15205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 14746549 - 14746770
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| || |||||||| |
|
|
| T |
14746549 |
catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa |
14746648 |
T |
|
| Q |
122 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct |
221 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||||||||| |
|
|
| T |
14746649 |
gattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatct |
14746748 |
T |
|
| Q |
222 |
aaagaataacatcaatgcttat |
243 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14746749 |
aaagaataacatcaatgcttat |
14746770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 79 - 251
Target Start/End: Complemental strand, 22395516 - 22395344
Alignment:
| Q |
79 |
agacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttacatctaatctatccactcgttggcctaagatactccttaagag |
178 |
Q |
| |
|
|||||||||||| || || ||||||||||| ||||||||||||| || |||||||||||| ||| ||||| ||| ||||||||||||| |||||| ||| |
|
|
| T |
22395516 |
agacaaccctcccatcatatattaagataccctaaagtgcaaagactctcccccttacatccaatttatcccctcattggcctaagatattccttatgag |
22395417 |
T |
|
| Q |
179 |
tgtcatctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
| |||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22395416 |
cggcatctacaacataagctggaaccatcactacttgtcatctaaagaataacatcaatgcttattcacctca |
22395344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 19545254 - 19545145
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||| | | |||||||||||||| ||||||| |||||||| |||||| |||||||||| | || |||||||||||||| ||||||||||| |
|
|
| T |
19545254 |
catcatcattttctcatcaaaattcacattataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa |
19545160 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
19545159 |
gattctcccccttac |
19545145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 25791827 - 25792056
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
25791827 |
catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagaaaaccctcctgtcatagattaagataccctaaagttcaaa |
25791926 |
T |
|
| Q |
122 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatct |
221 |
Q |
| |
|
||||| ||| |||||||||||| | ||| ||||||| |||||||||||||||||||| |||||||||| ||||| | |||| ||||||||||||||| |
|
|
| T |
25791927 |
gattctccctcttacatctaatttgtcccctcgttgacctaagatactccttaagagcgtcatctacagtataagctcgaaccaccactacttgtcatct |
25792026 |
T |
|
| Q |
222 |
aaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |
|
|
| T |
25792027 |
aaagaataaaatcaatgcttattaatctca |
25792056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 25756355 - 25756188
Alignment:
| Q |
84 |
accctcctgtcgtagattaagataccataaagtgcaaagattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtca |
183 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||||||| ||| |||||||||||| | ||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
25756355 |
accctcctgtcatagattaagataccctaaagtgcaaagattctccctcttacatctaatatgtcccctcgttgacctaagatactccttaagagcgtca |
25756256 |
T |
|
| Q |
184 |
tctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
|||||| ||||| | |||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25756255 |
tctacagtataagctcgaaccaccactacttgtcatctaaagaataaaatcaatgcttattcatctca |
25756188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 251
Target Start/End: Original strand, 19020257 - 19020386
Alignment:
| Q |
121 |
agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactactt-gtcat |
219 |
Q |
| |
|
|||||| |||||||||||||||||| ||| || |||||||||||||||||||||||| | |||| ||| |||||||||| ||||||||| ||||| |
|
|
| T |
19020257 |
agattctcccccttacatctaatctctcc--tcattggcctaagatactccttaagagcgccatcaacaacccaagttggaaccatcactactttgtcat |
19020354 |
T |
|
| Q |
220 |
ctaaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
19020355 |
ctaaataataacatcaatgcttattcatctca |
19020386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 32948837 - 32948924
Alignment:
| Q |
48 |
catcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||| || ||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
32948837 |
catcataacagcaacaacatattaaaattaaagacaaccctcccatc-aagatttagatactctaaagtgcaaagattctcccccttac |
32948924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 14137964 - 14138017
Alignment:
| Q |
37 |
atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcc |
90 |
Q |
| |
|
||||||||||||| ||||||| |||||||| |||| ||||||||||||||||| |
|
|
| T |
14137964 |
atcaaaattcacagcataacaacaacaacatattaagatttaagacaaccctcc |
14138017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 23909181 - 23909234
Alignment:
| Q |
37 |
atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcc |
90 |
Q |
| |
|
|||||||||| |||||||||| |||||| | |||||||||||||||||||||| |
|
|
| T |
23909181 |
atcaaaattctcatcataacaacaacaacttattaaaatttaagacaaccctcc |
23909234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1043 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: scaffold1043
Description:
Target: scaffold1043; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 22 - 250
Target Start/End: Complemental strand, 631 - 402
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaa-tttaagacaaccctcctgtcgtagattaagataccataaagtgcaa |
120 |
Q |
| |
|
|||||||||||| | || |||||||| |||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||| || | ||||| |
|
|
| T |
631 |
catcatcattctctcataaaaattcatatcataacagtaacaacattttaaaaatttaagacaaccctctcatcatagattaagatactctacattgcaa |
532 |
T |
|
| Q |
121 |
agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatc |
220 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||||| |
|
|
| T |
531 |
agattctcccccttacatctaatctatcccctcgttggcctaagatactccttaagagtgtcatctacaacataagctggaatcatccctacttgtcatc |
432 |
T |
|
| Q |
221 |
taaagaataacatcaatgcttattcatctc |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
431 |
taaagaataacatcaatgcttatccatctc |
402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 251
Target Start/End: Original strand, 17419480 - 17419705
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| |||| || | || |||||||||||||| ||||||||||| |
|
|
| T |
17419480 |
catcatcattctctcatcaaaattcacatcataatagtaacaacattttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaa |
17419579 |
T |
|
| Q |
122 |
gattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcacta-cttgtcatc |
220 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||| |||||| |||||||| |
|
|
| T |
17419580 |
gattcttccccttac-----atctatccactcgttggcctaagatactccttaagagtaccatctacaacataaactggaaccatcactaccttgtcata |
17419674 |
T |
|
| Q |
221 |
taaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17419675 |
taaagaataacatcaatgcttattcatctca |
17419705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 19727647 - 19727534
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||| |
|
|
| T |
19727647 |
catcatcattctctcgtcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaa |
19727548 |
T |
|
| Q |
122 |
gattcaccccctta |
135 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
19727547 |
gattctccgcctta |
19727534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 170 - 251
Target Start/End: Complemental strand, 19727538 - 19727457
Alignment:
| Q |
170 |
ccttaagagtgtcatctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19727538 |
ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca |
19727457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 12230807 - 12230930
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| || |||||||| |||||||||||||||||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
12230807 |
catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagacaaccctcccataatagattaagataccctaaagtgcaaa |
12230906 |
T |
|
| Q |
122 |
gattcacccccttacatctaatct |
145 |
Q |
| |
|
|||| ||||||||| || ||||| |
|
|
| T |
12230907 |
gattatcccccttacctcgaatct |
12230930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 13268018 - 13268132
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||| ||||| | ||||||||||||| |||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
13268018 |
catcatcattctctcgtcaaaattcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaa |
13268117 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
13268118 |
gattctcccccttac |
13268132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 18554830 - 18554721
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||| | | |||||||||||||||||||||| |||||||| |||||| |||||||||| | || |||||||||||||| ||||||||||| |
|
|
| T |
18554830 |
catcatcattttctcatcaaaattcacatcataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa |
18554736 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
18554735 |
gattctcccccttac |
18554721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 13559465 - 13559366
Alignment:
| Q |
37 |
atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
|||||| ||| |||||||||| |||||| | |||||||||||||||||||||| || ||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
13559465 |
atcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctcctccttac |
13559366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 15871061 - 15870947
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
||||||||||| | ||||||||| |||||||||||| || | |||||||||||||||||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
15871061 |
catcatcattcactcatcaaaatttacatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa |
15870962 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
15870961 |
gattctcccccttac |
15870947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 15888589 - 15888522
Alignment:
| Q |
69 |
ttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
|||||||||||||||||||||| || || ||| ||||| | |||||||||||||||| ||| ||||| |
|
|
| T |
15888589 |
ttaaaatttaagacaaccctcccatcataaatttagatatcctaaagtgcaaagattctccctcttac |
15888522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 13235248 - 13235284
Alignment:
| Q |
38 |
tcaaaattcacatcataacagtaacaacattttaaaa |
74 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
13235248 |
tcaaaattcacatcataacactaacaacatattaaaa |
13235284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 16680 - 16550
Alignment:
| Q |
121 |
agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatc |
220 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
16680 |
agattctcccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatc |
16581 |
T |
|
| Q |
221 |
taaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
16580 |
taaagaataacatcaatgcttattcatctca |
16550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 25738 - 25608
Alignment:
| Q |
121 |
agattcacccccttacatctaatctatccactcgttggcctaagatactccttaagagtgtcatctacataataagttggaacagtcactacttgtcatc |
220 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
25738 |
agattctcccccttacatctaatctatccactcgttggcctaagatactccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatc |
25639 |
T |
|
| Q |
221 |
taaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25638 |
taaagaataacatcaatgcttattcatctca |
25608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 29718211 - 29718097
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||||| |||||||| |||||||||||||||||||| | || ||||||||||||| ||||||||||| |
|
|
| T |
29718211 |
catcatcattctctcatcaaaattcacatcataacaacaacaacatattaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaa |
29718112 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
29718111 |
tattctcccccttac |
29718097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 60 - 135
Target Start/End: Complemental strand, 18985350 - 18985275
Alignment:
| Q |
60 |
aacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcaccccctta |
135 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| || ||||||| |||||| ||| |||||||||||| |||||||| |
|
|
| T |
18985350 |
aacaacatattaaaatttaatacaaccctcctatcatagattacgataccctaatgtgcaaagattctccccctta |
18985275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 26861307 - 26861212
Alignment:
| Q |
41 |
aaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
||||| ||| |||||||| || || || ||||||||||| |||||||| | || | |||||||||||| ||||||||||||| || ||||||||| |
|
|
| T |
26861307 |
aaattaacaccataacagcaataatatattaaaatttaatacaacccttccatcatggattaagataccctaaagtgcaaagaatctcccccttac |
26861212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 251
Target Start/End: Original strand, 22521725 - 22521805
Alignment:
| Q |
172 |
ttaagagtgtcatctacataataagttggaacagtcactactt-gtcatctaaagaataacatcaatgcttattcatctca |
251 |
Q |
| |
|
||||||| | |||||||| | |||||| ||| ||||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
22521725 |
ttaagagcgccatctacaacacaagttgtaaccatcactactttgtcatctaaaaaataacatcaatggttattcatctca |
22521805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 21977104 - 21977218
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||| | |||||||||||||||||||| | || || ||||||||||| ||||||||||| |
|
|
| T |
21977104 |
catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa |
21977203 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
21977204 |
gattctaccccttac |
21977218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 21999535 - 21999649
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||| | |||||||||||||||||||| | || || ||||||||||| ||||||||||| |
|
|
| T |
21999535 |
catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa |
21999634 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
21999635 |
gattctaccccttac |
21999649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 19186781 - 19186895
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||||| | |||||||||||||| |||| || || || ||||||||||| ||||||||||| |
|
|
| T |
19186781 |
catcatcattcactgatcaaaattcacatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagataccctaaagtgcaaa |
19186880 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| || |||||| |
|
|
| T |
19186881 |
gattctcctccttac |
19186895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 10302744 - 10302828
Alignment:
| Q |
48 |
catcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcaccccc |
132 |
Q |
| |
|
|||||||||| |||||| | |||||||||||||||||||||| || |||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
10302744 |
catcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctccccc |
10302828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 22161732 - 22161844
Alignment:
| Q |
24 |
tcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaaga |
123 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| ||||| | || ||||||||||||||||| | || || ||||||||||| ||||||||||||| |
|
|
| T |
22161732 |
tcatcattcactcatcaaaattcacatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaaga |
22161831 |
T |
|
| Q |
124 |
ttcacccccttac |
136 |
Q |
| |
|
||| |||||||| |
|
|
| T |
22161832 |
ttctaccccttac |
22161844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 136
Target Start/End: Original strand, 10341070 - 10341169
Alignment:
| Q |
37 |
atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
|||||||||| |||||||||| |||||| | |||||||||||||||| ||||| | |||||||||||||| ||||||||||| |||| ||||||||| |
|
|
| T |
10341070 |
atcaaaattctcatcataacatcaacaacttattaaaatttaagacaatcctcccaccatagattaagataccctaaagtgcaaatattctcccccttac |
10341169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 16357886 - 16357825
Alignment:
| Q |
69 |
ttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccc |
131 |
Q |
| |
|
|||||||||||||||||| ||| || || ||||||||||| |||||||||||||||| |||| |
|
|
| T |
16357886 |
ttaaaatttaagacaacc-tcccatcataaattaagataccctaaagtgcaaagattctcccc |
16357825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0364 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0364
Description:
Target: scaffold0364; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 136
Target Start/End: Original strand, 14588 - 14676
Alignment:
| Q |
48 |
catcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
||||||||||| |||||||| || ||||| ||||||||||||| || |||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
14588 |
catcataacagcaacaacatattgaaattaaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctcccccttac |
14676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 11934 - 11838
Alignment:
| Q |
37 |
atcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcaccccct |
133 |
Q |
| |
|
||||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| || || |||| || ||| |||||||||||||||| |||||| |
|
|
| T |
11934 |
atcaaaatttacatcataacagcaacaacatattaaaatttaatacaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccct |
11838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 11955 - 12059
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||||| || || ||||||||||| ||||||||||| |
|
|
| T |
11955 |
catcatcattctctcatcaaaattcacatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa |
12054 |
T |
|
| Q |
122 |
gattc |
126 |
Q |
| |
|
|||| |
|
|
| T |
12055 |
tattc |
12059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0385 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0385
Description:
Target: scaffold0385; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 16144 - 16258
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
||||||||||| | ||||||||||||||||||| || ||||| | |||||||||||||| ||||||| || || ||||||||||| |||||| |||| |
|
|
| T |
16144 |
catcatcattcactcatcaaaattcacatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaa |
16243 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
16244 |
gattctcccccttac |
16258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 10454186 - 10454072
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||||| || ||||| ||||||| || |||||||| || || |||||||||||||| |||||| |||| |
|
|
| T |
10454186 |
catcatcattctctcatcaaaattcacaccataacagcaaaaacatattaaaatataggacaacccacccatcatagattaagataccctaaagttcaaa |
10454087 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
10454086 |
gattcttccccttac |
10454072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 17861441 - 17861384
Alignment:
| Q |
25 |
catcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagac |
82 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17861441 |
catcattctctcatcaaaattcacgtcataacagtaacaacattttaaaatttaagac |
17861384 |
T |
|
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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 1683229 - 1683281
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaa |
74 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||||| | |||||||| |||||| |
|
|
| T |
1683229 |
catcatcagtctctcatcaaaattcacatcataaccgcaacaacatattaaaa |
1683281 |
T |
|
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 21496562 - 21496675
Alignment:
| Q |
22 |
catcatcattctataatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaa |
121 |
Q |
| |
|
|||||||||||| | || || ||||| |||||| || |||||||| || |||||||||| |||||||| | |||||||||||||| ||||||||||| |
|
|
| T |
21496562 |
catcatcattctctcataaatattcatatcatattagaaacaacatatttaaatttaagataaccctccca-catagattaagataccctaaagtgcaaa |
21496660 |
T |
|
| Q |
122 |
gattcacccccttac |
136 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
21496661 |
gattctcccccttac |
21496675 |
T |
|
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Target: scaffold0207 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 827 - 739
Alignment:
| Q |
48 |
catcataacagtaacaacatt-ttaaaatttaagacaaccctcctgtcgtagattaagataccataaagtgcaaagattcacccccttac |
136 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||| || |||||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
827 |
catcataacagcaacaacataattaaaattaaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctcccccttac |
739 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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