View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0321_high_2 (Length: 384)
Name: NF0321_high_2
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0321_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 30 - 376
Target Start/End: Complemental strand, 47679250 - 47678904
Alignment:
| Q |
30 |
ctctggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatc |
129 |
Q |
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| T |
47679250 |
ctctggccacatacaatttctaaaattattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatc |
47679151 |
T |
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| Q |
130 |
cactgtatcacgaaataattatgctcaatcattagatatgtacgacaatcgatcttcgatgaccgatcattttcattttccacgttttttgttataaaat |
229 |
Q |
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| T |
47679150 |
cactgtatcacaaaacaattatgctcaatcattagatatgaacgacaatcgatcttcgatgaccaatcattttgattttccacgttttttgttataaaat |
47679051 |
T |
|
| Q |
230 |
tcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggca |
329 |
Q |
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| T |
47679050 |
tcttatttggaaatgatgaatatctcattagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggca |
47678951 |
T |
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| Q |
330 |
tcaaacaatcttgcgattccaaagtctgtaatttttgggttcatctc |
376 |
Q |
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| T |
47678950 |
tcaaacaatcttgcgattccaaaatctgtaatttttgggttcatctc |
47678904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 137
Target Start/End: Complemental strand, 47690573 - 47690470
Alignment:
| Q |
34 |
ggccacatacaatttctaaaatgattacaccaaaactaaacacatctgacttaactgagaattgtccatgtctaatgtactccggagccatgtatccact |
133 |
Q |
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| T |
47690573 |
ggccacaaacaatttctaaaataattacaccaaaactgaacacatctgacttgatcgaaaattctccatgtttaatgtactctggagccatgtatccgct |
47690474 |
T |
|
| Q |
134 |
gtat |
137 |
Q |
| |
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|||| |
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| T |
47690473 |
gtat |
47690470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 47690306 - 47690192
Alignment:
| Q |
258 |
tagttcaagcatttccttaatacttacactgttccaacaacggtctttgtcatgccatgagtttgattggcatcaaacaatcttgcgattccaaagtctg |
357 |
Q |
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|||||| |||||||| | | ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| || ||||| |||| |
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| T |
47690306 |
tagttctagcatttcttaagtacttactaagttccaataacggtgcttgtcatgccatgagtttgattggcatcaaacaattttgcaatgccaaaatctg |
47690207 |
T |
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| Q |
358 |
taatttttgggttca |
372 |
Q |
| |
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|||||||||| |||| |
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| T |
47690206 |
taatttttggattca |
47690192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 6525607 - 6525563
Alignment:
| Q |
59 |
tacaccaaaactaaacacatctgacttaactgagaattgtccatg |
103 |
Q |
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| T |
6525607 |
tacaccaaaactaaatacatctgacttcactgaaaattgtccatg |
6525563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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