View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0321_high_5 (Length: 342)

Name: NF0321_high_5
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0321_high_5
NF0321_high_5
[»] chr7 (6 HSPs)
chr7 (16-330)||(18395911-18396234)
chr7 (216-275)||(27073633-27073692)
chr7 (216-275)||(27204621-27204680)
chr7 (263-325)||(23565300-23565363)
chr7 (222-323)||(40808414-40808517)
chr7 (229-325)||(36146661-36146759)
[»] chr8 (8 HSPs)
chr8 (208-323)||(11712244-11712361)
chr8 (229-310)||(32902442-32902524)
chr8 (232-310)||(29796578-29796656)
chr8 (177-258)||(7597380-7597462)
chr8 (208-258)||(8153572-8153622)
chr8 (232-285)||(3232092-3232145)
chr8 (208-285)||(8863333-8863409)
chr8 (236-284)||(18141659-18141706)
[»] chr2 (4 HSPs)
chr2 (208-323)||(4560904-4561021)
chr2 (241-285)||(28671797-28671841)
chr2 (240-325)||(11067134-11067221)
chr2 (236-310)||(36773387-36773462)
[»] scaffold0129 (1 HSPs)
scaffold0129 (229-309)||(19854-19933)
[»] chr4 (6 HSPs)
chr4 (170-285)||(21704109-21704225)
chr4 (170-285)||(3739397-3739511)
chr4 (236-323)||(6677306-6677394)
chr4 (229-310)||(36463657-36463738)
chr4 (232-275)||(4587792-4587835)
chr4 (230-263)||(43208174-43208207)
[»] chr1 (5 HSPs)
chr1 (236-310)||(8871315-8871390)
chr1 (224-280)||(2263271-2263327)
chr1 (234-310)||(28265821-28265898)
chr1 (210-258)||(25116407-25116455)
chr1 (259-325)||(49918210-49918278)
[»] chr5 (1 HSPs)
chr5 (211-285)||(5611451-5611524)
[»] chr3 (5 HSPs)
chr3 (211-285)||(21156738-21156811)
chr3 (232-285)||(40519479-40519532)
chr3 (232-285)||(2075350-2075403)
chr3 (236-280)||(9666754-9666797)
chr3 (229-285)||(37761765-37761820)


Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 18395911 - 18396234
Alignment:
Q  16 gatggacatcatcaaggaaaacaaatgttgaaatttgtctaaaatatcgacaaaaattgggccgtgatttgcaaaaatcgtgacgcgattttggttaagg 115  Q
    ||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18395911 gatggccataatcaaggaaaacaaatgttgaaatttgtctaaaaaatcgacaaaaattgggccgcgatttgcaaaaatcgtgacgagattttggttaagg 18396010  T
Q  116 t---------tttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 206  Q
    |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18396011 ttttggaggttttgattcgaaaaattgtggcacgaaagaggaaaatcgtggaacgattttaagtaacttgaaatcgtggcacaattagtgaaaattgtga 18396110  T
Q  207 tacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactt 306  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||    
T  18396111 tacgattttctcggaacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagagagaaactttggatatcaaggaggtaactt 18396210  T
Q  307 taggttgaatgtctttgatgatgt 330  Q
    ||||||||||||||||| ||||||    
T  18396211 taggttgaatgtctttggtgatgt 18396234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 27073633 - 27073692
Alignment:
Q  216 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 275  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27073633 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27073692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 27204680 - 27204621
Alignment:
Q  216 ctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagag 275  Q
    |||||| ||| |||||||||||||||||||||||||| |||||| ||||  |||||||||    
T  27204680 ctcggggcttttgcattatataagacttcattcttcaagttttaggtaggacttcaagag 27204621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 325
Target Start/End: Complemental strand, 23565363 - 23565300
Alignment:
Q  263 agagcttcaagagtgagaaactttgggtatc-aaggaggtaactttaggttgaatgtctttgat 325  Q
    ||||||||||||| ||||||||| || |||| ||||||||||||||||||| |  |||||||||    
T  23565363 agagcttcaagagagagaaacttgggatatcaaaggaggtaactttaggttaagggtctttgat 23565300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 222 - 323
Target Start/End: Original strand, 40808414 - 40808517
Alignment:
Q  222 acttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtc 319  Q
    ||||||||  ||||||  ||||||||||||||||| |||||||  ||| ||||| || |||||| | | ||| ||||||||||||||| |||||| ||||    
T  40808414 acttgtgctctatatagaacttcattcttcatgttataagtaggacttaaagagagataaacttagagaatcaaaggaggtaactttagggttgagtgtc 40808513  T
Q  320 tttg 323  Q
    ||||    
T  40808514 tttg 40808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 325
Target Start/End: Complemental strand, 36146759 - 36146661
Alignment:
Q  229 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttag-gttgaatgtctttgat 325  Q
    |||||| |||| ||||||||||||| ||||  | ||||||||||||| || |||||| ||  ||| |||||||||||||||| |||||  |||||||||    
T  36146759 cattatttaaggcttcattcttcattttttgggaagagcttcaagagagaaaaacttgggaaatcaaaggaggtaactttagtgttgagggtctttgat 36146661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 208 - 323
Target Start/End: Complemental strand, 11712361 - 11712244
Alignment:
Q  208 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactt 306  Q
    |||||||||| ||||| |||||| ||||||||  ||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| || ||||||||||    
T  11712361 acgattttcttgggacatgtgcactatataaggtttcattctttatgttttaggtagagcttcaagagagagaaacttagggtatcaaatgaggtaactt 11712262  T
Q  307 ta-ggttgaatgtctttg 323  Q
    || |||||| ||||||||    
T  11712261 tagggttgagtgtctttg 11712244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 32902524 - 32902442
Alignment:
Q  229 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 310  Q
    |||| ||||||||||||||||||||||||| || || |||||||||| ||||||||| ||  |||| | ||||||||||||||    
T  32902524 cattgtataagacttcattcttcatgttttgaggagggcttcaagagagagaaacttgggaaatcagatgaggtaactttagg 32902442  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 310
Target Start/End: Complemental strand, 29796656 - 29796578
Alignment:
Q  232 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 310  Q
    |||||||| |||||||||||||||||| || ||| ||||||||| |||||||||  |  ||| |||||||||||||||||    
T  29796656 tatataaggcttcattcttcatgttttgaggaga-cttcaagagagagaaacttgagaaatcaaaggaggtaactttagg 29796578  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 7597380 - 7597462
Alignment:
Q  177 aaatcgtggcacaattagtgaaaattgtgatacga-ttttctcgggacttgtgcattatataagacttcattcttcatgtttt 258  Q
    |||||||||||||||| |||||||| | |  || | |||||||| || ||| ||| |||||||| ||||||||||||||||||    
T  7597380 aaatcgtggcacaattggtgaaaatcggggcacaatttttctcgagatttgagcactatataaggcttcattcttcatgtttt 7597462  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 258
Target Start/End: Original strand, 8153572 - 8153622
Alignment:
Q  208 acgattttctcgggacttgtgcattatataagacttcattcttcatgtttt 258  Q
    |||||||||||||  ||||| ||||||| ||| ||||||||||||||||||    
T  8153572 acgattttctcggatcttgtacattataaaaggcttcattcttcatgtttt 8153622  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 3232145 - 3232092
Alignment:
Q  232 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    |||||||| |||||||||||||||||| |||||||| | |||||  ||||||||    
T  3232145 tatataaggcttcattcttcatgttttgagtagagcattaagagaaagaaactt 3232092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 285
Target Start/End: Original strand, 8863333 - 8863409
Alignment:
Q  208 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    ||||||||||| |  | |||||| |||||||| ||||||||||||||||||  || |||||||||||| || ||||||    
T  8863333 acgattttctcagatcatgtgcactatataaggcttcattcttcatgttttgggt-gagcttcaagagagaaaaactt 8863409  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 18141659 - 18141706
Alignment:
Q  236 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaact 284  Q
    |||| ||||||||||||| |||| |||||||||||||||| ||||||||    
T  18141659 taaggcttcattcttcat-ttttgagtagagcttcaagagagagaaact 18141706  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 4560904 - 4561021
Alignment:
Q  208 acgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactt 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | ||||||||| || |||||| ||  |||| ||||| ||||||    
T  4560904 acgattttctcgggacttgtgcattgtataagacttcattcttcatgtttttagaataacttcaagagagaaaaacttaggaaatcagaggagataactt 4561003  T
Q  307 tag-gttgaatgtctttg 323  Q
    ||| ||||| ||||||||    
T  4561004 tagagttgagtgtctttg 4561021  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 285
Target Start/End: Original strand, 28671797 - 28671841
Alignment:
Q  241 cttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    |||||||||||||||||| ||||| |||||||||| |||||||||    
T  28671797 cttcattcttcatgttttgagtagggcttcaagagagagaaactt 28671841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 11067134 - 11067221
Alignment:
Q  240 acttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 325  Q
    |||||||||||||| |||| || || |||||||||| ||||||||  ||  ||| ||||||||||||||| |||||| ||||||||||    
T  11067134 acttcattcttcattttttgaggagggcttcaagagagagaaactagggaaatcaaaggaggtaactttatggttgattgtctttgat 11067221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 36773387 - 36773462
Alignment:
Q  236 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 310  Q
    |||||||||||||||||| ||||   |||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  36773387 taagacttcattcttcattttttgtatagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 36773462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 19933 - 19854
Alignment:
Q  229 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatcaaggaggtaactttag 309  Q
    ||||||||| ||||||||||||| |||||| ||||| |||||||||| | ||||||| ||  |||||||||||||||||||    
T  19933 cattatatatgacttcattcttcttgttttgagtag-gcttcaagagagtgaaacttgggaaatcaaggaggtaactttag 19854  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 21704225 - 21704109
Alignment:
Q  170 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtaga-gct 268  Q
    |||| |||||||||||||| |||||  ||||||| |  ||||||||  | |||| |||||| ||| |||||||||||| ||||||||||  ||||| |||    
T  21704225 taacgtgaaatcgtggcacgattaggtaaaattggggcacgattttgacaggacatgtgcactatttaagacttcatttttcatgttttgtgtagaggct 21704126  T
Q  269 tcaagagtgagaaactt 285  Q
    ||||||| |||||||||    
T  21704125 tcaagagagagaaactt 21704109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 285
Target Start/End: Complemental strand, 3739511 - 3739397
Alignment:
Q  170 taacttgaaatcgtggcacaattagtgaaaattgtgatacgattttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagctt 269  Q
    |||| ||||||||||||| |||  ||| |||| | |  ||||||||  |||||| |||||||||| ||||||||||||||||||||||| |||| |  ||    
T  3739511 taacgtgaaatcgtggcaaaatgtgtgtaaatcgaggcacgattttgacgggacatgtgcattatttaagacttcattcttcatgttttgagtaca-ttt 3739413  T
Q  270 caagagtgagaaactt 285  Q
    |||||| |||||||||    
T  3739412 caagagagagaaactt 3739397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 6677306 - 6677394
Alignment:
Q  236 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttg 323  Q
    |||| |||||||||||||||||| ||||| |||||||||  |||||| || ||||||| ||||||||||||||| |||||| ||||||||    
T  6677306 taaggcttcattcttcatgttttgagtag-gcttcaagaaagagaaatttagggtatcaaaggaggtaactttagggttgagtgtctttg 6677394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 36463738 - 36463657
Alignment:
Q  229 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatca-aggaggtaactttagg 310  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||| || |||||| ||  |||| ||||||||||||||||    
T  36463738 cattatttaaggcttcattcttcat-ttttgagtagagcttcaagagagaaaaacttgggaaatcataggaggtaactttagg 36463657  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 275
Target Start/End: Original strand, 4587792 - 4587835
Alignment:
Q  232 tatataagacttcattcttcatgttttaagtagagcttcaagag 275  Q
    |||| |||||||||||||||||||||| || |||||||||||||    
T  4587792 tataaaagacttcattcttcatgttttgaggagagcttcaagag 4587835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 263
Target Start/End: Complemental strand, 43208207 - 43208174
Alignment:
Q  230 attatataagacttcattcttcatgttttaagta 263  Q
    ||||||||||||||||||||||||||||| ||||    
T  43208207 attatataagacttcattcttcatgttttgagta 43208174  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 8871390 - 8871315
Alignment:
Q  236 taagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 310  Q
    |||| ||||||||||||||||||  ||||||||||||||| ||||||||  || |||| ||| |||||||||||||    
T  8871390 taaggcttcattcttcatgtttttggtagagcttcaagagagagaaactagggatatcaaagcaggtaactttagg 8871315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 2263327 - 2263271
Alignment:
Q  224 ttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgaga 280  Q
    ||||||| |||||||| ||||||||||||||||||  ||||||| ||||||| ||||    
T  2263327 ttgtgcactatataaggcttcattcttcatgttttgtgtagagcgtcaagagagaga 2263271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 28265898 - 28265821
Alignment:
Q  234 tataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaactttagg 310  Q
    |||||| ||||||||||||| ||||  | ||||||||||||| ||||||||  ||  ||| |||||||||||||||||    
T  28265898 tataaggcttcattcttcattttttgggaagagcttcaagagagagaaactagggaaatcaaaggaggtaactttagg 28265821  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 258
Target Start/End: Original strand, 25116407 - 25116455
Alignment:
Q  210 gattttctcgggacttgtgcattatataagacttcattcttcatgtttt 258  Q
    ||||||||| || | |||||| |||||||| ||||||||||||||||||    
T  25116407 gattttctcaggtcatgtgcactatataagtcttcattcttcatgtttt 25116455  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 325
Target Start/End: Original strand, 49918210 - 49918278
Alignment:
Q  259 aagtagagcttcaagagtgagaaactttgggtatc-aaggaggtaacttta-ggttgaatgtctttgat 325  Q
    ||||||||||| ||||| ||||||||| ||  ||| ||||||||||||||| ||||||| |||||||||    
T  49918210 aagtagagcttgaagagagagaaacttgggaaatcaaaggaggtaactttagggttgaaggtctttgat 49918278  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 5611524 - 5611451
Alignment:
Q  211 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  5611524 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 5611451  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 285
Target Start/End: Complemental strand, 21156811 - 21156738
Alignment:
Q  211 attttctcgggacttgtgcattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    ||||||||| | ||||| ||| || ||||||||||||||||||||||| |  ||||||||||||| |||||||||    
T  21156811 attttctcgagtcttgtacataatttaagacttcattcttcatgttttga-aagagcttcaagagagagaaactt 21156738  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 40519532 - 40519479
Alignment:
Q  232 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    |||||||| |||||||| |||||| || |||||||||||||||| |||||||||    
T  40519532 tatataaggcttcattcatcatgtattgagtagagcttcaagagagagaaactt 40519479  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 2075403 - 2075350
Alignment:
Q  232 tatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    |||||||| |||||||||||||||||| |||   |||||||||| |||||||||    
T  2075403 tatataaggcttcattcttcatgttttgagtgaggcttcaagagagagaaactt 2075350  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 280
Target Start/End: Complemental strand, 9666797 - 9666754
Alignment:
Q  236 taagacttcattcttcatgttttaagtagagcttcaagagtgaga 280  Q
    |||||||||||||||||| |||| |||||||||||||||| ||||    
T  9666797 taagacttcattcttcat-ttttgagtagagcttcaagagagaga 9666754  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 285
Target Start/End: Complemental strand, 37761820 - 37761765
Alignment:
Q  229 cattatataagacttcattcttcatgttttaagtagagcttcaagagtgagaaactt 285  Q
    ||||||||||||||| |||||||||||||| ||| | |||||||||| ||| |||||    
T  37761820 cattatataagactttattcttcatgtttttagttg-gcttcaagagagagtaactt 37761765  T

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