View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0321_high_8 (Length: 280)

Name: NF0321_high_8
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0321_high_8
NF0321_high_8
[»] chr4 (12 HSPs)
chr4 (53-243)||(19727457-19727647)
chr4 (53-166)||(12230807-12230920)
chr4 (53-158)||(17419480-17419585)
chr4 (53-166)||(13268018-13268131)
chr4 (60-159)||(13559374-13559473)
chr4 (53-166)||(15870948-15871061)
chr4 (53-166)||(18554722-18554830)
chr4 (53-159)||(15888530-15888636)
chr4 (162-243)||(17419623-17419705)
chr4 (58-157)||(13235237-13235326)
chr4 (124-159)||(9886991-9887026)
chr4 (124-164)||(20872219-20872259)
[»] chr5 (10 HSPs)
chr5 (53-159)||(25791827-25791933)
chr5 (79-166)||(32948837-32948923)
chr5 (53-147)||(14137949-14138043)
chr5 (162-243)||(25756188-25756269)
chr5 (162-243)||(19020304-19020386)
chr5 (162-243)||(25791975-25792056)
chr5 (60-124)||(23909173-23909237)
chr5 (115-159)||(25756311-25756355)
chr5 (53-166)||(25581332-25581444)
chr5 (53-158)||(13938961-13939064)
[»] chr7 (3 HSPs)
chr7 (53-166)||(16068059-16068172)
chr7 (162-242)||(16067944-16068024)
chr7 (60-159)||(9692997-9693096)
[»] scaffold0010 (2 HSPs)
scaffold0010 (53-166)||(143102-143215)
scaffold0010 (162-243)||(143250-143331)
[»] scaffold0408 (2 HSPs)
scaffold0408 (53-166)||(14984-15097)
scaffold0408 (162-235)||(15132-15205)
[»] chr6 (8 HSPs)
chr6 (53-166)||(14746549-14746662)
chr6 (53-166)||(19545146-19545254)
chr6 (162-235)||(14746697-14746770)
chr6 (174-243)||(22395344-22395413)
chr6 (110-166)||(22395460-22395516)
chr6 (120-159)||(26587843-26587882)
chr6 (53-89)||(22395515-22395551)
chr6 (120-148)||(26588160-26588188)
[»] chr2 (4 HSPs)
chr2 (53-166)||(29718098-29718211)
chr2 (91-166)||(18985275-18985350)
chr2 (82-166)||(26861213-26861297)
chr2 (164-243)||(22521725-22521805)
[»] scaffold1043 (2 HSPs)
scaffold1043 (53-166)||(517-631)
scaffold1043 (162-242)||(402-482)
[»] scaffold0118 (1 HSPs)
scaffold0118 (53-158)||(11955-12060)
[»] chr3 (8 HSPs)
chr3 (53-158)||(21977104-21977209)
chr3 (53-158)||(21999535-21999640)
chr3 (55-158)||(22161732-22161835)
chr3 (60-166)||(10341062-10341168)
chr3 (53-159)||(19186781-19186887)
chr3 (79-159)||(10302744-10302824)
chr3 (53-159)||(16357828-16357933)
chr3 (91-166)||(16928586-16928662)
[»] scaffold0385 (1 HSPs)
scaffold0385 (53-166)||(16144-16257)
[»] chr8 (5 HSPs)
chr8 (53-158)||(10454081-10454186)
chr8 (56-113)||(17861384-17861441)
chr8 (53-166)||(15727753-15727869)
chr8 (53-105)||(1683229-1683281)
chr8 (54-98)||(1681192-1681236)
[»] scaffold0364 (1 HSPs)
scaffold0364 (79-166)||(14588-14675)
[»] scaffold0061 (2 HSPs)
scaffold0061 (162-243)||(16550-16631)
scaffold0061 (162-243)||(25608-25689)
[»] chr1 (2 HSPs)
chr1 (53-166)||(21496562-21496674)
chr1 (121-165)||(17451472-17451516)
[»] scaffold0290 (1 HSPs)
scaffold0290 (64-164)||(11838-11938)
[»] scaffold0207 (1 HSPs)
scaffold0207 (79-166)||(740-827)
[»] scaffold0094 (1 HSPs)
scaffold0094 (53-166)||(2502-2609)
[»] scaffold0381 (1 HSPs)
scaffold0381 (124-159)||(11518-11553)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 53 - 243
Target Start/End: Complemental strand, 19727647 - 19727457
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19727647 catcatcattctctcgtcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccctcccgtcatagattaagataccctaaagtgcaaa 19727548  T
Q  153 gattctctcccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19727547 gattctccgccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 19727457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 12230807 - 12230920
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||||||| |||||||||||| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12230807 catcatcattctctcatcaaaattcacatcataatagcaacaacatattaaaatttaagacaaccctcccataatagattaagataccctaaagtgcaaa 12230906  T
Q  153 gattctctccctta 166  Q
    |||| || ||||||    
T  12230907 gattatccccctta 12230920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 17419480 - 17419585
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||  || || |||||||||||||||||||||||||||||    
T  17419480 catcatcattctctcatcaaaattcacatcataatagtaacaacattttaaaatttaaaacaaatcttccttcatagattaagataccctaaagtgcaaa 17419579  T
Q  153 gattct 158  Q
    ||||||    
T  17419580 gattct 17419585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 13268018 - 13268131
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||| ||||| ||||||||||||||  |||||  | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  13268018 catcatcattctctcgtcaaaattcacatcataacaacaacaatgtattaaaatttaagaaaaccctcccatcataaattaagataccctaaagtgcaaa 13268117  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  13268118 gattctccccctta 13268131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 13559473 - 13559374
Alignment:
Q  60 attctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 159  Q
    |||||||||||||| ||| ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13559473 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 13559374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 15871061 - 15870948
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| ||||||||| || |||||||||||| || |     ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15871061 catcatcattcactcatcaaaatttacatcataacagaaaaagtgcattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 15870962  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  15870961 gattctccccctta 15870948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 18554830 - 18554722
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    |||||||||| |||||||||| ||||||||||||||| |||||||| ||||||     ||||||||||  ||||||||||||||||||||||||||||||    
T  18554830 catcatcattttctcatcaaaattcacatcataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 18554736  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  18554735 gattctccccctta 18554722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 15888636 - 15888530
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| ||||||||  || |||||||||||| || |     ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  15888636 catcatcattcactcatcaatatttacatcataacagcaaaagtgcattaaaatttaagacaaccctcccatcataaatttagatatcctaaagtgcaaa 15888537  T
Q  153 gattctc 159  Q
    |||||||    
T  15888536 gattctc 15888530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 17419623 - 17419705
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactac-ttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||||  ||||||||||||||  ||||||  ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  17419623 ccttaagagtaccatctacaacataaactggaaccatcactaccttgtcatataaagaataacatcaatgcttattcatctca 17419705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 13235237 - 13235326
Alignment:
Q  58 tcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattc 157  Q
    |||||||||| ||||| |||||||||||||| ||||||||| ||||          |||||| || ||||| ||||| ||||||||||||||||||||||    
T  13235237 tcattctctcgtcaaaattcacatcataacactaacaacatattaa----------aacccttccgtcataaattaatataccctaaagtgcaaagattc 13235326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Original strand, 9886991 - 9887026
Alignment:
Q  124 tcatagattaagataccctaaagtgcaaagattctc 159  Q
    ||||| ||||||||||||||||||||||||||||||    
T  9886991 tcatatattaagataccctaaagtgcaaagattctc 9887026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 20872259 - 20872219
Alignment:
Q  124 tcatagattaagataccctaaagtgcaaagattctctccct 164  Q
    ||||| |||||||||||| ||||||||||||||||| ||||    
T  20872259 tcatatattaagatacccaaaagtgcaaagattctccccct 20872219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 25791827 - 25791933
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||| ||||    
T  25791827 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagaaaaccctcctgtcatagattaagataccctaaagttcaaa 25791926  T
Q  153 gattctc 159  Q
    |||||||    
T  25791927 gattctc 25791933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 32948837 - 32948923
Alignment:
Q  79 catcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    ||||||||||| |||||||| |||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||    
T  32948837 catcataacagcaacaacatattaaaattaaagacaaccctcccatca-agatttagatactctaaagtgcaaagattctccccctta 32948923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 147
Target Start/End: Original strand, 14137949 - 14138043
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagt 147  Q
    |||||| ||||  |||||||| |||||| |||||||  |||||||| |||| |||||||||||||||||||||| | | ||||||||||||||||    
T  14137949 catcattattccttcatcaaaattcacagcataacaacaacaacatattaagatttaagacaaccctcccatcaaataataagataccctaaagt 14138043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 25756269 - 25756188
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||| ||||||||||  ||||| | ||||   |||||||||||||||||||||||| ||||||||||||||||||||    
T  25756269 ccttaagagcgtcatctacagtataagctcgaaccaccactacttgtcatctaaagaataaaatcaatgcttattcatctca 25756188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 19020304 - 19020386
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactactt-gtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||| | |||| |||||  ||||||||||  ||||||||| |||||||||| ||||||||||||||||||||||||||    
T  19020304 ccttaagagcgccatcaacaacccaagttggaaccatcactactttgtcatctaaataataacatcaatgcttattcatctca 19020386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 25791975 - 25792056
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||| ||||||||||  ||||| | ||||   |||||||||||||||||||||||| ||||||||||||| ||||||    
T  25791975 ccttaagagcgtcatctacagtataagctcgaaccaccactacttgtcatctaaagaataaaatcaatgcttattaatctca 25792056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 23909173 - 23909237
Alignment:
Q  60 attctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccat 124  Q
    |||||||||||||| ||| ||||||||||  |||||| | |||||||||||||||||||||||||    
T  23909173 attctctcatcaaaattctcatcataacaacaacaacttattaaaatttaagacaaccctcccat 23909237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 25756355 - 25756311
Alignment:
Q  115 accctcccatcatagattaagataccctaaagtgcaaagattctc 159  Q
    |||||||  ||||||||||||||||||||||||||||||||||||    
T  25756355 accctcctgtcatagattaagataccctaaagtgcaaagattctc 25756311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 25581444 - 25581332
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacatt-ttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaa 151  Q
    |||||| | |||||||||| ||| | ||||||||||  ||||||||  |||||||| |||||   ||||| ||||||||| |||||||||||||||| ||    
T  25581444 catcataaatctctcatcacagt-ctcatcataacaacaacaacataattaaaattaaagacgttcctccaatcatagat-aagataccctaaagtggaa 25581347  T
Q  152 agattctctccctta 166  Q
    |||||||| ||||||    
T  25581346 agattctccccctta 25581332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 13938961 - 13939064
Alignment:
Q  53 catcatcattctctcatcaaagt-tcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaa 151  Q
    |||||| | |||||||||||| | |||||||||||||  |||||||| |||| | |||| |||  ||  |||||||| |||||||||| |||||||||||    
T  13938961 catcataaatctctcatcaaaatctcacatcataacaacaacaacatcttaagaattaa-aca--ccgtccatcatatattaagatacactaaagtgcaa 13939057  T
Q  152 agattct 158  Q
    |||||||    
T  13939058 agattct 13939064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 16068172 - 16068059
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    |||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  16068172 catcatcattttctcatcaaaattcacatcataacagtaacaacatattaaaatttaagacaaccctcccgtcatagattaagataccctaaattgcaaa 16068073  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  16068072 gattctccccctta 16068059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 16068024 - 16067944
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctc 242  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068024 ccttaagagtgtcatctacataataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctc 16067944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 60 - 159
Target Start/End: Complemental strand, 9693096 - 9692997
Alignment:
Q  60 attctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 159  Q
    |||||||||||||| ||| ||||||||||  |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9693096 attctctcatcaaacttctcatcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagatactctaaagtgcaaagattctc 9692997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 143102 - 143215
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||    
T  143102 catcatcaatctctcatcaaaattcacatcataacagtaacaacattttaaaatttaagacaaccttcccatcatagattaagataccataaagtgaaaa 143201  T
Q  153 gattctctccctta 166  Q
    ||||| | ||||||    
T  143202 gattcaccccctta 143215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 143250 - 143331
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  143250 ccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatctaaagaatgacatcaatgcttattcatctca 143331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 14984 - 15097
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||    
T  14984 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 15083  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  15084 gattctccccctta 15097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 15132 - 15205
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttat 235  Q
    ||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  15132 ccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatctaaagaataacatcaatgcttat 15205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 14746549 - 14746662
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||| ||||||||    
T  14746549 catcatcattctctcataaaaattcacatcataacagtaacaacattttaaaatttaagtcaaccttctcctcatagattaagataccctatagtgcaaa 14746648  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  14746649 gattctccccctta 14746662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 19545254 - 19545146
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    |||||||||| |||||||||| ||||||| ||||||| |||||||| ||||||     ||||||||||  ||||||||||||||||||||||||||||||    
T  19545254 catcatcattttctcatcaaaattcacattataacagcaacaacatattaaaa-----gacaaccctcatatcatagattaagataccctaaagtgcaaa 19545160  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  19545159 gattctccccctta 19545146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 14746697 - 14746770
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttat 235  Q
    ||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  14746697 ccttaagagtgtcatcttcaacataagctggaaccatcactacttgtcatctaaagaataacatcaatgcttat 14746770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 174 - 243
Target Start/End: Complemental strand, 22395413 - 22395344
Alignment:
Q  174 catctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  22395413 catctacaacataagctggaaccatcactacttgtcatctaaagaataacatcaatgcttattcacctca 22395344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 166
Target Start/End: Complemental strand, 22395516 - 22395460
Alignment:
Q  110 agacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||    
T  22395516 agacaaccctcccatcatatattaagataccctaaagtgcaaagactctccccctta 22395460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 26587843 - 26587882
Alignment:
Q  120 cccatcatagattaagataccctaaagtgcaaagattctc 159  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  26587843 cccatcatagattaagataccctaaagtgaaaagattctc 26587882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 22395551 - 22395515
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacag 89  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  22395551 catcatctttctctcatcaaaattcacatcataacag 22395515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Original strand, 26588160 - 26588188
Alignment:
Q  120 cccatcatagattaagataccctaaagtg 148  Q
    |||||||||||||||||||||||||||||    
T  26588160 cccatcatagattaagataccctaaagtg 26588188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 29718211 - 29718098
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  29718211 catcatcattctctcatcaaaattcacatcataacaacaacaacatattaaaatttaagacaacccttccatcatagattaagatactctaaagtgcaaa 29718112  T
Q  153 gattctctccctta 166  Q
     |||||| ||||||    
T  29718111 tattctccccctta 29718098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 91 - 166
Target Start/End: Complemental strand, 18985350 - 18985275
Alignment:
Q  91 aacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    |||||||| ||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||    
T  18985350 aacaacatattaaaatttaatacaaccctcctatcatagattacgataccctaatgtgcaaagattctccccctta 18985275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 26861297 - 26861213
Alignment:
Q  82 cataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    |||||||| || || || ||||||||||| |||||||| ||||||| |||||||||||||||||||||||||| |||| ||||||    
T  26861297 cataacagcaataatatattaaaatttaatacaacccttccatcatggattaagataccctaaagtgcaaagaatctccccctta 26861213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 22521725 - 22521805
Alignment:
Q  164 ttaagagtgtcatctacaacataagttggaacagtcactactt-gtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||| | ||||||||||| |||||| |||  ||||||||| |||||||||| ||||||||||||| ||||||||||||    
T  22521725 ttaagagcgccatctacaacacaagttgtaaccatcactactttgtcatctaaaaaataacatcaatggttattcatctca 22521805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 631 - 517
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaa-tttaagacaaccctcccatcatagattaagataccctaaagtgcaa 151  Q
    ||||||||||||||||| ||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||| | |||||    
T  631 catcatcattctctcataaaaattcatatcataacagtaacaacattttaaaaatttaagacaaccctctcatcatagattaagatactctacattgcaa 532  T
Q  152 agattctctccctta 166  Q
    |||||||| ||||||    
T  531 agattctccccctta 517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 482 - 402
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctc 242  Q
    ||||||||||||||||||||||||||| |||||   || ||||||||||||||||||||||||||||||||||| ||||||    
T  482 ccttaagagtgtcatctacaacataagctggaatcatccctacttgtcatctaaagaataacatcaatgcttatccatctc 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 11955 - 12060
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  11955 catcatcattctctcatcaaaattcacatcataacagcaacaatgaattaaaatttaagacaaccctcccatcataaattaagataccctaaagtgcaaa 12054  T
Q  153 gattct 158  Q
     |||||    
T  12055 tattct 12060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 21977104 - 21977209
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||  | |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  21977104 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21977203  T
Q  153 gattct 158  Q
    ||||||    
T  21977204 gattct 21977209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 21999535 - 21999640
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||  | |||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  21999535 catcatcattcactcatcaaaattcacatcataacagcaacaatgtattaaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaa 21999634  T
Q  153 gattct 158  Q
    ||||||    
T  21999635 gattct 21999640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 22161732 - 22161835
Alignment:
Q  55 tcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaaga 154  Q
    ||||||||| ||||||||| ||||||||||||||| |||||  | || ||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  22161732 tcatcattcactcatcaaaattcacatcataacagcaacaatgtattcaaatttaagacaacccttccatcataaattaagataccctaaagtgcaaaga 22161831  T
Q  155 ttct 158  Q
    ||||    
T  22161832 ttct 22161835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 10341062 - 10341168
Alignment:
Q  60 attctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 159  Q
    |||||||||||||| ||| ||||||||||  |||||| | |||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||    
T  10341062 attctctcatcaaaattctcatcataacatcaacaacttattaaaatttaagacaatcctcccaccatagattaagataccctaaagtgcaaatattctc 10341161  T
Q  160 tccctta 166  Q
     ||||||    
T  10341162 cccctta 10341168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 19186781 - 19186887
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| || |||||| ||||||||||||||| |||||  | |||||||||||||| |||| ||||||||| |||||||||||||||||||||||    
T  19186781 catcatcattcactgatcaaaattcacatcataacagcaacaatgtattaaaatttaagacgacccacccatcataaattaagataccctaaagtgcaaa 19186880  T
Q  153 gattctc 159  Q
    |||||||    
T  19186881 gattctc 19186887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 10302744 - 10302824
Alignment:
Q  79 catcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 159  Q
    ||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10302744 catcataacatcaacaacttattaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctc 10302824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 16357933 - 16357828
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| ||||||||  || |||||||||||| || |     |||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  16357933 catcatcattcactcatcaacatttacatcataacagcaaaagtgcattaaaatttaagacaacc-tcccatcataaattaagataccctaaagtgcaaa 16357835  T
Q  153 gattctc 159  Q
    |||||||    
T  16357834 gattctc 16357828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 166
Target Start/End: Original strand, 16928586 - 16928662
Alignment:
Q  91 aacaacattttaaaatttaagacaaccctc-ccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||||||  ||||||| ||| |||||||||||||    
T  16928586 aacaacatattaaaatttaagacaaccctttccatcatagattaagatactttaaagtgaaaatattctctccctta 16928662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 16144 - 16257
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||| ||||||||| |||||||||||| || |||||  | |||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  16144 catcatcattcactcatcaaaattcacatcataaaagcaacaatgtattaaaatttaagacgaccctcccatcataaattaagataccctaaagtacaaa 16243  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  16244 gattctccccctta 16257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 10454186 - 10454081
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||||||| |||||| |||||||| || ||||| ||||||| || |||||||| |||||||||||||||||||||||||||| ||||    
T  10454186 catcatcattctctcatcaaaattcacaccataacagcaaaaacatattaaaatataggacaacccacccatcatagattaagataccctaaagttcaaa 10454087  T
Q  153 gattct 158  Q
    ||||||    
T  10454086 gattct 10454081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 17861441 - 17861384
Alignment:
Q  56 catcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagac 113  Q
    |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||    
T  17861441 catcattctctcatcaaaattcacgtcataacagtaacaacattttaaaatttaagac 17861384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 15727753 - 15727869
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctc------ccatcatagattaagataccctaaag 146  Q
    |||| |||| ||||||| ||| ||||||||||||||   ||||||| ||||||| ||| |||||||||      ||||||||||||||||||||||||||    
T  15727753 catcttcatcctctcataaaaattcacatcataaca---acaacatattaaaatctaatacaaccctctcaatcccatcatagattaagataccctaaag 15727849  T
Q  147 tgcaaagattctctccctta 166  Q
    || || ||||||| ||||||    
T  15727850 tgtaaggattctccccctta 15727869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 1683229 - 1683281
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaa 105  Q
    |||||||| |||||||||||| ||||||||||||| | |||||||| ||||||    
T  1683229 catcatcagtctctcatcaaaattcacatcataaccgcaacaacatattaaaa 1683281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 98
Target Start/End: Original strand, 1681192 - 1681236
Alignment:
Q  54 atcatcattctctcatcaaagttcacatcataacagtaacaacat 98  Q
    ||||||| |||||||||||| ||||||||||||| | ||||||||    
T  1681192 atcatcagtctctcatcaaaattcacatcataaccgcaacaacat 1681236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 14588 - 14675
Alignment:
Q  79 catcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    ||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14588 catcataacagcaacaacatattgaaattaaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctccccctta 14675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 16631 - 16550
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16631 ccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatctaaagaataacatcaatgcttattcatctca 16550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 25689 - 25608
Alignment:
Q  162 ccttaagagtgtcatctacaacataagttggaacagtcactacttgtcatctaaagaataacatcaatgcttattcatctca 243  Q
    ||||||||| |||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25689 ccttaagagcgtcatctacaacgtaagctggaacaatcactacttgtcatctaaagaataacatcaatgcttattcatctca 25608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 53 - 166
Target Start/End: Original strand, 21496562 - 21496674
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    ||||||||||||||||| ||  |||| ||||||  || |||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  21496562 catcatcattctctcataaatattcatatcatattagaaacaacatatttaaatttaagataaccctccca-catagattaagataccctaaagtgcaaa 21496660  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  21496661 gattctccccctta 21496674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 17451472 - 17451516
Alignment:
Q  121 ccatcatagattaagataccctaaagtgcaaagattctctccctt 165  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||    
T  17451472 ccatcatatattaagataccctaaagtgcaaagattctatccctt 17451516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 11938 - 11838
Alignment:
Q  64 tctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccc 163  Q
    |||||||||| || |||||||||||| |||||||| ||||||||||| |||||||||| |||||| |||| || |||||||||||||||||||||| |||    
T  11938 tctcatcaaaatttacatcataacagcaacaacatattaaaatttaatacaaccctcctatcataaattacgacaccctaaagtgcaaagattctccccc 11839  T
Q  164 t 164  Q
    |    
T  11838 t 11838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 827 - 740
Alignment:
Q  79 catcataacagtaacaacatt-ttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaagattctctccctta 166  Q
    ||||||||||| ||||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||    
T  827 catcataacagcaacaacataattaaaattaaagacaaccctccaatcatagattaagataccctaaagtgcaaag-ttctccccctta 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 53 - 166
Target Start/End: Complemental strand, 2609 - 2502
Alignment:
Q  53 catcatcattctctcatcaaagttcacatcataacagtaacaacattttaaaatttaagacaaccctcccatcatagattaagataccctaaagtgcaaa 152  Q
    |||||||||| |||| ||||| ||||||||||| ||| |||||||| ||||||| |||     |||||  ||||||||||||||||||||||| ||||||    
T  2609 catcatcattttctcgtcaaaattcacatcataccagcaacaacatattaaaatataa-----ccctcatatcatagattaagataccctaaa-tgcaaa 2516  T
Q  153 gattctctccctta 166  Q
    ||||||| ||||||    
T  2515 gattctccccctta 2502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 11553 - 11518
Alignment:
Q  124 tcatagattaagataccctaaagtgcaaagattctc 159  Q
    ||||| ||||||||||||||||||||||||||||||    
T  11553 tcatatattaagataccctaaagtgcaaagattctc 11518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 391 times since January 2019
Visitors: 2761