View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0321_low_12 (Length: 263)
Name: NF0321_low_12
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0321_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 28 - 244
Target Start/End: Complemental strand, 3330292 - 3330076
Alignment:
| Q |
28 |
ctatttatattgtgacttcgaaactttatacacttttattattattttttatcttcatgttgagttcatacatgataaatttagtttgttgtagaaactg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3330292 |
ctatttatattgtgacttcgaaactttatacacttttattattattttttatcttcatgttgagttcatacatgataaatttagtttgttgtagaaactg |
3330193 |
T |
|
| Q |
128 |
aatccgagatagacgatgaagcctatcatatttgagcattttccctaattctaagaatgatagagcacataagtgcttcaagaatcccaatgtgaaggtg |
227 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3330192 |
aatctgagatagacgatgaagcctatcatatttgagcattttccctaattataagaatgatagagcacataagtgcttcaagaatcccaatgtgaaggtg |
3330093 |
T |
|
| Q |
228 |
aataagttttggggaag |
244 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3330092 |
aataagttttggggaag |
3330076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 3329853 - 3329686
Alignment:
| Q |
77 |
tatcttcatgttgagttcatacatgataaatttagtttgttgtagaaactgaatccgagatagacgatgaagcctatcatatttgagcattttccctaat |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
3329853 |
tatcttcatgttgagttcatacatgataactttagtttgttgtagaaagtgaatttgagatagacggtgaagcctatcatgcttgagcattttccctaat |
3329754 |
T |
|
| Q |
177 |
tctaagaatgatagagcacataagtgcttcaagaatcccaatgtgaaggtgaataagttttggggaag |
244 |
Q |
| |
|
| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
3329753 |
gccaagaacgatagagcacataagtgcttctagaatcccaatgtgaaggtgaatgagtttttgggaag |
3329686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 685 times since January 2019
Visitors: 2783