View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0321_low_13 (Length: 260)

Name: NF0321_low_13
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0321_low_13
NF0321_low_13
[»] chr7 (9 HSPs)
chr7 (122-207)||(16060364-16060449)
chr7 (135-207)||(9080196-9080268)
chr7 (142-207)||(48376627-48376692)
chr7 (140-207)||(16069010-16069077)
chr7 (1-59)||(16060512-16060570)
chr7 (1-59)||(48376787-48376845)
chr7 (22-59)||(9080338-9080375)
chr7 (1-59)||(4531807-4531865)
chr7 (140-181)||(41744134-41744175)
[»] scaffold0063 (2 HSPs)
scaffold0063 (122-207)||(28443-28528)
scaffold0063 (21-59)||(28342-28380)
[»] scaffold0091 (3 HSPs)
scaffold0091 (122-207)||(28907-28994)
scaffold0091 (135-207)||(24710-24782)
scaffold0091 (1-59)||(29057-29115)
[»] scaffold0003 (2 HSPs)
scaffold0003 (135-207)||(130623-130695)
scaffold0003 (1-59)||(130795-130853)
[»] chr6 (4 HSPs)
chr6 (135-207)||(14980460-14980532)
chr6 (1-59)||(14989432-14989490)
chr6 (1-57)||(14980320-14980376)
chr6 (22-59)||(10906902-10906939)
[»] chr3 (10 HSPs)
chr3 (135-207)||(16642123-16642195)
chr3 (135-207)||(4712997-4713069)
chr3 (135-201)||(14062983-14063049)
chr3 (135-207)||(14055222-14055294)
chr3 (1-57)||(4712857-4712913)
chr3 (1-52)||(14055094-14055145)
chr3 (1-52)||(16642304-16642355)
chr3 (1-59)||(14062835-14062893)
chr3 (1-52)||(13926906-13926957)
chr3 (156-207)||(14481800-14481851)
[»] chr8 (5 HSPs)
chr8 (138-207)||(23657638-23657707)
chr8 (138-207)||(23658413-23658482)
chr8 (1-59)||(23657751-23657809)
chr8 (4-59)||(23658526-23658581)
chr8 (140-207)||(17862246-17862313)
[»] chr1 (4 HSPs)
chr1 (135-207)||(13882464-13882536)
chr1 (1-59)||(13882293-13882351)
chr1 (136-207)||(51658854-51658925)
chr1 (1-59)||(51658719-51658777)
[»] scaffold0218 (2 HSPs)
scaffold0218 (127-207)||(14227-14307)
scaffold0218 (1-58)||(14378-14435)
[»] scaffold0061 (1 HSPs)
scaffold0061 (135-207)||(18099-18171)
[»] scaffold1043 (1 HSPs)
scaffold1043 (140-207)||(1427-1494)
[»] chr4 (1 HSPs)
chr4 (140-207)||(19728447-19728514)
[»] chr5 (3 HSPs)
chr5 (140-202)||(25756783-25756845)
chr5 (140-202)||(25790956-25791018)
chr5 (150-207)||(24832209-24832266)
[»] scaffold1269 (1 HSPs)
scaffold1269 (1-36)||(1-36)


Alignment Details
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 16060449 - 16060364
Alignment:
Q  122 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16060449 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16060364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 9080268 - 9080196
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9080268 atatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 9080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 48376692 - 48376627
Alignment:
Q  142 tattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  48376692 tattgactatgagaatgatgacgtataattatgatgatgacttaaatgatggtgtctaatatacat 48376627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 16069010 - 16069077
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||||| |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  16069010 tatattgacgatgagaatgatgacgtataattatgatgatgatttgaatgatgatgtctaatatacat 16069077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16060570 - 16060512
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  16060570 atatgtaattaaataaatatgatgagaaatgataatgtttatatgttagtgatgatgag 16060512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 48376845 - 48376787
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  48376845 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttattgatgatgag 48376787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 9080375 - 9080338
Alignment:
Q  22 atgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9080375 atgagaaatgataatgtttatatgttagtgatgatgag 9080338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 4531807 - 4531865
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||| ||||||||||| ||||||||| |||||| |||||| ||| ||| ||||||    
T  4531807 atatgtaaataaataaatacaatgagaaataataatgcttatattttattgatgatgag 4531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 41744175 - 41744134
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatga 181  Q
    ||||||||  |||||||||||||||| |||||||||||||||    
T  41744175 tatattgatgatgagaatgacgacgtctaattatgatgatga 41744134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 28443 - 28528
Alignment:
Q  122 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28443 gggtggtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgaattgaatgatggtgtctaatatacat 28528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 28342 - 28380
Alignment:
Q  21 gatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    ||||||||||||| |||||||||||||||||| ||||||    
T  28342 gatgagaaatgatgatgtttatatgttagtgatgatgag 28380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 28994 - 28907
Alignment:
Q  122 gggtggtgtgtaaatatatatat--tgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28994 gggtggtgtgtaaatatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 28907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 24782 - 24710
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24782 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 24710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29115 - 29057
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29115 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 29057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 130695 - 130623
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  130695 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 130623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 130853 - 130795
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  130853 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 130795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 14980460 - 14980532
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14980460 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 14980532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14989432 - 14989490
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14989432 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 14989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14980320 - 14980376
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14980320 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 14980376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 10906902 - 10906939
Alignment:
Q  22 atgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  10906902 atgagaaatgataatgtttatattttagtgatgatgag 10906939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 16642195 - 16642123
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642195 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 16642123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 4712997 - 4713069
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4712997 atatatatattgactatgagaatgacgacgtataattatgatgataacttgaatgatggtgtctaatatacat 4713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 14062983 - 14063049
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaat 201  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14062983 atatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaatgatggtgtctaat 14063049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 14055222 - 14055294
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  14055222 atatatatattgacgatgataatgatgacgtataattatgatgatgacttgaatgatgatgtctaatatacat 14055294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 4712857 - 4712913
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4712857 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatg 4712913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 14055094 - 14055145
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14055094 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 14055145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16642355 - 16642304
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16642355 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 16642304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 14062835 - 14062893
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  14062835 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagttatgatgag 14062893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 13926906 - 13926957
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtga 52  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||    
T  13926906 atatttaaataaataaatacgatgagaaatgataatgtttatattttagtga 13926957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 14481800 - 14481851
Alignment:
Q  156 atgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||| |||||||||||||||||| |||||||||| |  |||||||||||    
T  14481800 atgacgatgtataattatgatgatgatttgaatgatgattcctaatatacat 14481851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 23657707 - 23657638
Alignment:
Q  138 tatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23657707 tatatatagactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 23657638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 138 - 207
Target Start/End: Complemental strand, 23658482 - 23658413
Alignment:
Q  138 tatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  23658482 tatatatagactatgagaatgacgacttataattatgatgatgacttgaatgatggtgtctaatatacat 23658413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 23657809 - 23657751
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  23657809 atatgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23657751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 23658581 - 23658526
Alignment:
Q  4 tgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  23658581 tgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatgag 23658526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 17862246 - 17862313
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||||| ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  17862246 tatattgacgatgagaatgataaggtataattatgatgatgatttgaatgatgatgtctaatatacat 17862313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 13882464 - 13882536
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882464 atatatatatagacaatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 13882536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 13882293 - 13882351
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13882293 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatgag 13882351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 136 - 207
Target Start/End: Original strand, 51658854 - 51658925
Alignment:
Q  136 tatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| | ||||||||||||    
T  51658854 tatatatattgacgatgagaatgatgacgtataattatgatgatgacttgaacgatgatatctaatatacat 51658925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 51658719 - 51658777
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatgag 59  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  51658719 atatgtaattaaataaatacgatgagaaatgataatatttatatgttagtgatgatgag 51658777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 127 - 207
Target Start/End: Complemental strand, 14307 - 14227
Alignment:
Q  127 gtgtgtaaatatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  14307 gtgtgtatatatatatattgactatgacaatgatgacgtataattatgatgatgacttatatgatggtgtctaatatacat 14227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14435 - 14378
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgaagatga 58  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14435 atatgtaattaaataaatacgatgagaaatgataatgtttatatgttagtgatgatga 14378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 18099 - 18171
Alignment:
Q  135 atatatatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||    
T  18099 atatatatattgactatgagaatgacgaagtatgattatgatgatgacttgaatgatggtatctaatatacat 18171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 1427 - 1494
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    ||||||||| ||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||||    
T  1427 tatattgacgatgagaatgataacgtataattatgatgatgatttgaatgatgatgtctaatatacat 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 19728447 - 19728514
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||| || ||||||||||  | |||||||||||||||||| |||||||||| ||||||||||||||    
T  19728447 tatattaacgatgagaatgataaagtataattatgatgatgatttgaatgatgatgtctaatatacat 19728514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 25756783 - 25756845
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaata 202  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25756783 tatattgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcaaata 25756845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 25791018 - 25790956
Alignment:
Q  140 tatattgactatgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaata 202  Q
    ||||||||| |||||||||| ||| ||||||||||||||||| |||||||||| |||| ||||    
T  25791018 tatattgacgatgagaatgatgacttataattatgatgatgatttgaatgatgatgtcgaata 25790956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 24832209 - 24832266
Alignment:
Q  150 atgagaatgacgacgtataattatgatgatgacttgaatgatggtgtctaatatacat 207  Q
    |||||||||| || |||||||||||||||||| |||||||||| |  |||||||||||    
T  24832209 atgagaatgatgatgtataattatgatgatgatttgaatgatgattcctaatatacat 24832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1269 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1269
Description:

Target: scaffold1269; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 36 - 1
Alignment:
Q  1 atatgtaattaaataaatacgatgagaaatgataat 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  36 atatgtaattaaataaatacgatgagaaatgataat 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 741 times since January 2019
Visitors: 2787