View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0321_low_4 (Length: 373)
Name: NF0321_low_4
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0321_low_4 |
 | |
|
| [»] scaffold0091 (1 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold1269 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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|
| [»] scaffold0737 (1 HSPs) |
| | |
|
| [»] scaffold0166 (1 HSPs) |
| | |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0094 (1 HSPs) |
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| [»] scaffold0145 (1 HSPs) |
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| [»] scaffold0063 (1 HSPs) |
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| [»] scaffold0057 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 16642644 - 16642300
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
16642644 |
gagcggagactttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatatggtatgatattaggaataaagtttatagagtcta |
16642545 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16642544 |
gaatagatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
16642445 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt- |
306 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16642444 |
aagagatacaatggtgatataaacagttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaatta |
16642345 |
T |
|
| Q |
307 |
aataaatacgatgagaaatgataatgtttatatgttggtgatgat |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16642344 |
aataaatacgatgagaaatgataatgtttatatgttagtgatgat |
16642300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 4712578 - 4712913
Alignment:
| Q |
18 |
tttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaatagatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4712578 |
tttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctataatagatga |
4712677 |
T |
|
| Q |
118 |
gaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagataca |
217 |
Q |
| |
|
|| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4712678 |
gagaatattgtatgttcgtaaaaggaataataaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagataca |
4712777 |
T |
|
| Q |
218 |
atggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
4712778 |
atggtgatataaacggttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacg |
4712877 |
T |
|
| Q |
317 |
atgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4712878 |
atgagaaatgataatgtttatatgttagtgatgatg |
4712913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 352
Target Start/End: Original strand, 14062554 - 14062891
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaata |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| || ||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
14062554 |
gagactttgtatgtaatgatagcgaataagaaaaaaacttgagaccaagaatgaggaatatggcatgatatcaggaataaagtttatagagcctagaata |
14062653 |
T |
|
| Q |
113 |
gatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagag |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14062654 |
gatgagaggataatgtatgttcgtaaaatgaatat---actaaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattaatgaagat |
14062750 |
T |
|
| Q |
213 |
atacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
14062751 |
atacaatggtgatataaacggttgatagagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataa |
14062850 |
T |
|
| Q |
312 |
atacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
14062851 |
atacgatgagaaatgataatgtttatatgttagttatgatg |
14062891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 14054828 - 14055146
Alignment:
| Q |
16 |
actttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaatagat |
115 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
14054828 |
actttgtatgtaatggtagcgaataagaaaacaacttgagaccaagaatgaagaatatggtatgatatcaggaataaagtttatagagccta-------- |
14054919 |
T |
|
| Q |
116 |
gagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagata |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14054920 |
-------taatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattaatgaagagata |
14055012 |
T |
|
| Q |
216 |
caatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaata |
314 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| | |||||||| |||||||| |
|
|
| T |
14055013 |
caatggtgatataaacggttaatagagatgaataatgaggattctataatgcgacgaagagtgatgacgaagatattatacatatgtaattaaataaata |
14055112 |
T |
|
| Q |
315 |
cgatgagaaatgataatgtttatatgttggtgat |
348 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
14055113 |
cgatgagaaatgataatgtttatatgttagtgat |
14055146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 127 - 350
Target Start/End: Original strand, 13926735 - 13926960
Alignment:
| Q |
127 |
gtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgata |
226 |
Q |
| |
|
|||||| | ||| |||| || |||||||||||| | ||| | |||||||| | || |||||||||||||||| |||| |||||| ||| | |||| ||| |
|
|
| T |
13926735 |
gtatgtccataagatgattaataaaataaaatagagggatgatgacgtaggaatgtgttacgcgtaagggttgaattaatgaagaaataaagtggttata |
13926834 |
T |
|
| Q |
227 |
taaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaa |
324 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||||| ||||||||||||| | ||||||||||| || | ||| |||||||||||||||||| |
|
|
| T |
13926835 |
taaacggttgatagagagtaacgatgaggaatccataatgtgatgaagagtgatgacaattgatattatatatatttaaataaataaatacgatgagaaa |
13926934 |
T |
|
| Q |
325 |
tgataatgtttatatgttggtgatga |
350 |
Q |
| |
|
||||||||||||||| || ||||||| |
|
|
| T |
13926935 |
tgataatgtttatattttagtgatga |
13926960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 14481408 - 14481642
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagag--tctagaatagatgagaa |
120 |
Q |
| |
|
||||||||||| ||||| ||||||| ||||| || | |||||| |||| | |||||||| ||| ||||||| |||| || ||| |||||||||||| |
|
|
| T |
14481408 |
atgtaatgataatgaataggaaaacatcttgagactaggaatgaaaaataagatatgatatcagggataaagtatatatagggtcttgaatagatgagag |
14481507 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
|||| |||||| || | ||||||| |||||||||||| | ||| |||| |||||||| || | |||||||||| ||||||| ||||||||||||||| |
|
|
| T |
14481508 |
aatagagtatgtctgtgagatgaataataaaataaaataaagggatgttggcgtagaat-gagtcacgcgtaaggagtggattaatgaagagatacaatg |
14481606 |
T |
|
| Q |
221 |
gtgatataaacggttgatagagatgaataatgagga |
256 |
Q |
| |
|
||||| ||| ||| ||||||||| ||| ||||||| |
|
|
| T |
14481607 |
gtgatgtaagcggatgatagagagtaatgatgagga |
14481642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 5943739 - 5943879
Alignment:
| Q |
36 |
gaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaaaataatgtatgtt |
133 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||| ||||||| | ||||||||||||| | |||||||||||||||||||| |||||| |
|
|
| T |
5943739 |
gaataagaaaacatcttgagactaagaatgaggaatagggaatgatatcggaaataaagtttatatatatcctagaatagatgagaaaatagagtatgtc |
5943838 |
T |
|
| Q |
134 |
cgtaaaatgaatactaaaataaaatataaggaagttgacgt |
174 |
Q |
| |
|
| ||| ||||||| |||||||||||| | ||| |||||||| |
|
|
| T |
5943839 |
cataagatgaataataaaataaaatagagggatgttgacgt |
5943879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 21975418 - 21975296
Alignment:
| Q |
136 |
taaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggtt |
235 |
Q |
| |
|
||||||||||| |||||||||||| | ||| ||||| |||||| ||| | | | | || |||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
21975418 |
taaaatgaataataaaataaaatagagggatgttgatgtagaaatgagtcatgtgcaaaggttggattaatcaagagaataaatggtgatataaacggtt |
21975319 |
T |
|
| Q |
236 |
gatagagatgaataatgaggaat |
258 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
21975318 |
gatagagagtaatgatgaggaat |
21975296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 258
Target Start/End: Complemental strand, 21997849 - 21997727
Alignment:
| Q |
136 |
taaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggtt |
235 |
Q |
| |
|
||||||||||| |||||||||||| | ||| ||||| |||||| ||| | | | | || |||||||||| | |||||| ||||||||||||||||||| |
|
|
| T |
21997849 |
taaaatgaataataaaataaaatagagggatgttgatgtagaaatgagtcatgtgcaaaggttggattaatcaagagaataaatggtgatataaacggtt |
21997750 |
T |
|
| Q |
236 |
gatagagatgaataatgaggaat |
258 |
Q |
| |
|
|||||||| ||| ||||||||| |
|
|
| T |
21997749 |
gatagagagtaatgatgaggaat |
21997727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 27870292 - 27870500
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaag--tttatagagtctagaatagatgagaa |
120 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| | || |||||||||||||| |||||||||| | ||||||| | |||||| |||||||||||||||| |
|
|
| T |
27870292 |
atgttatgataacgaataagtaaacaacttaagactaagaatgaggaatatggtatgatatca-taataaagtatatatagatcctagaatagatgagaa |
27870390 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
|||| |||||| || | || ||| |||||||||||| | ||| |||||| ||| ||| | | |||||||||||||||| ||||| |||| || |
|
|
| T |
27870391 |
aatagagtatgtctgtgagatagataataaaataaaatagagggatagtgacgtggaaatgagtcgcacgtaagggttggattaatgaagggataatgtg |
27870490 |
T |
|
| Q |
221 |
gtgatataaa |
230 |
Q |
| |
|
|||||||||| |
|
|
| T |
27870491 |
gtgatataaa |
27870500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 258
Target Start/End: Complemental strand, 22160012 - 22159892
Alignment:
| Q |
138 |
aaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggttga |
237 |
Q |
| |
|
||||||||| |||||||||||| | ||| |||| |||||| | | | | | | || |||||||||| | |||||| ||||||||||||||||||||| |
|
|
| T |
22160012 |
aaatgaataataaaataaaatagagggattttgatgtagaaattagtcatgtgcaaaggttggattaatcaagagaataaatggtgatataaacggttga |
22159913 |
T |
|
| Q |
238 |
tagagatgaataatgaggaat |
258 |
Q |
| |
|
|||||| ||| ||||||||| |
|
|
| T |
22159912 |
tagagagtaatgatgaggaat |
22159892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 16359367 - 16359447
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagag |
103 |
Q |
| |
|
||||||||||| ||||| |||| ||| ||||| || ||||||||| |||||| |||| ||| || | |||||| ||||||| |
|
|
| T |
16359367 |
atgtaatgataacgaattagaatacatcttgagactaagaatgagtaataggttatgctatcagaagtaaagtatatagag |
16359447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 16060859 - 16060514
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16060859 |
gagcggagactttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
16060760 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16060759 |
gaatagatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
16060660 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt- |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||| |
|
|
| T |
16060659 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatctataatgtgatgaggagtgatgacgaagatattatatatatgtaatta |
16060560 |
T |
|
| Q |
307 |
aataaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16060559 |
aataaatatgatgagaaatgataatgtttatatgttagtgatgatg |
16060514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 48377130 - 48376789
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaa-taagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaat |
111 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
48377130 |
gagaatttgcatttaatgatagcgaaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagttcatagagcctagaat |
48377031 |
T |
|
| Q |
112 |
agatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaaga |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48377030 |
agatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattagtgaaga |
48376931 |
T |
|
| Q |
212 |
gatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aata |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
48376930 |
gatacaatggtgatataaacggttgatagagatgaataatgaggaatctataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaata |
48376831 |
T |
|
| Q |
311 |
aatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
48376830 |
aatacgatgagaaatgataatgtttatatgttattgatgatg |
48376789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 136 - 352
Target Start/End: Original strand, 4531645 - 4531863
Alignment:
| Q |
136 |
taaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggtt |
235 |
Q |
| |
|
||||||||||| |||||||||||| | || |||| |||| || ||| | ||| ||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4531645 |
taaaatgaataataaaataaaatagaggggtgttggcgtataaatgagtcacgtgtaagggttggattaatgaagagataaggtggtgatataaacggtt |
4531744 |
T |
|
| Q |
236 |
gatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacgatgagaaatgataatgt |
333 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||||||||||||| | ||||||||||| |||| ||| ||||||||| ||||||||| |||||| |
|
|
| T |
4531745 |
gatagagagtaatgatgaggaatccataatgtgacgaagagtgatgacaattgatattatatatatgtaaataaataaatacaatgagaaataataatgc |
4531844 |
T |
|
| Q |
334 |
ttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
4531845 |
ttatattttattgatgatg |
4531863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 35 - 258
Target Start/End: Original strand, 37945616 - 37945841
Alignment:
| Q |
35 |
cgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaaaataatgtatgt |
132 |
Q |
| |
|
||||||||| |||| | ||| || ||||||||| |||||||||||||||| | |||||||| |||||| |||||||||||| || || | |||||| |
|
|
| T |
37945616 |
cgaataagagaacatcgtgagactaagaatgagaaatagggtatgatatttgaaataaagtagatagagagcctagaatagatgcgagaacagagtatgt |
37945715 |
T |
|
| Q |
133 |
tcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacg |
232 |
Q |
| |
|
||||| ||||||| |||| ||||||| | | | |||||||||||| ||| | |||| |||||||| ||||| ||||||||| | ||||| |||||| | |
|
|
| T |
37945716 |
ccgtaagatgaataataaattaaaatagaggaatgttgacgtagaaatgagtcacgcataagggtttgattaatgaagagatttagtggtggtataaagg |
37945815 |
T |
|
| Q |
233 |
gttgatagagatgaataatgaggaat |
258 |
Q |
| |
|
||||||||| | ||| ||||||||| |
|
|
| T |
37945816 |
gttgatagatagtaatgatgaggaat |
37945841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 15867051 - 15867110
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaata |
72 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
15867051 |
gagactttgtatataatgatagcgaataaaaaaacaacttgagaccaagaatgaggaata |
15867110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 317 - 352
Target Start/End: Complemental strand, 9080375 - 9080340
Alignment:
| Q |
317 |
atgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9080375 |
atgagaaatgataatgtttatatgttagtgatgatg |
9080340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 215
Target Start/End: Complemental strand, 20026280 - 20026124
Alignment:
| Q |
59 |
aagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaa |
156 |
Q |
| |
|
|||||||| |||||||||||||||| || |||||||| |||| || ||||||||||||||| |||| ||| || |||| ||||||| ||||||| | |
|
|
| T |
20026280 |
aagaatgatgaatagggtatgatatcag-aataaagtatatatagggcctagaatagatgagagaatatagtacgtctgtaagatgaataataaaataga |
20026182 |
T |
|
| Q |
157 |
atataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagata |
215 |
Q |
| |
|
||| | ||| |||||||| || ||| | |||||||||| | ||||| |||||||||| |
|
|
| T |
20026181 |
ataaagggatgttgacgt-caaatgagtcacgcgtaaggtgttgattaatgaagagata |
20026124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0091 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0091
Description:
Target: scaffold0091; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 29405 - 29059
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaa-caacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtct |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29405 |
gagcggagactttgcatgtaatgatagcgaataagaaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagagtct |
29306 |
T |
|
| Q |
107 |
agaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagt |
206 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
29305 |
agaataaatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattatgtgtaagggttggattagt |
29206 |
T |
|
| Q |
207 |
gaagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29205 |
gaagagatacaatggtgatataaacggttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaatt |
29106 |
T |
|
| Q |
307 |
-aataaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29105 |
aaataaatacgatgagaaatgataatgtttatatgttagtgatgatg |
29059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 14980041 - 14980376
Alignment:
| Q |
18 |
tttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaatagatga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14980041 |
tttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctataatagatga |
14980140 |
T |
|
| Q |
118 |
gaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagataca |
217 |
Q |
| |
|
|| |||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14980141 |
gagaatattgtatgttcgtaaaaggaataataaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagataca |
14980240 |
T |
|
| Q |
218 |
atggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
14980241 |
atggtgatataaacggttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagataatatatatatgtaattaaataaatacg |
14980340 |
T |
|
| Q |
317 |
atgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14980341 |
atgagaaatgataatgtttatatgttagtgatgatg |
14980376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 14989143 - 14989488
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
14989143 |
gagcggagactttgcatgtaatgataacgaataagaaaacaacttgaggccaagaatgaggaatttggtattatattaggaataaagtttatagagtcta |
14989242 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
14989243 |
gaataaatgagagaataatgtatgttcgtaaaataaatactaaaataaaatatagggaagttgacgtagaattgaattaagagtaagggttggattagtg |
14989342 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt- |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14989343 |
aagagatacaatggtgatataaacggttgatagagatgaataatgacgaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaatta |
14989442 |
T |
|
| Q |
307 |
aataaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14989443 |
aataaatacgatgagaaatgataatgtttatatgttagtgatgatg |
14989488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 9191382 - 9191065
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagag-tct-agaa |
110 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||||| ||||| || |||||||| |||||||||||||||| ||| ||||||||||||||| ||| || | |
|
|
| T |
9191382 |
gagacgttgtatgtaatgataaaaaataagaaaacatcttgaaactaagaatgaagaatagggtatgatatcagggataaagtttatagagatcttagga |
9191283 |
T |
|
| Q |
111 |
tagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaag |
210 |
Q |
| |
|
|||| |||| |||| ||||| | ||| ||||||| |||||| | ||| | ||| |||||||||||| || || || |||||| ||||||||| ||||| |
|
|
| T |
9191282 |
tagacgagagaatagattatgtccataagatgaataataaaatcatatagagggatgttgacgtagaaatgcatcacacgtaagagttggattaatgaag |
9191183 |
T |
|
| Q |
211 |
agatacaatggtgatataaacggttgatagagatgaataatgaggaatac-ataa-tgtgacgaagagtgatgacga-agatattatatacatgt-aatt |
306 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||| ||||||||| | |||| ||||| ||||||||||| || ||||| ||||| |||| ||| |
|
|
| T |
9191182 |
agataaggtggtgatataaacggttgatagagagtaatgatgaggaatcctataactgtgataaagagtgatgatgattgatataatatatatgtgaata |
9191083 |
T |
|
| Q |
307 |
aataaatacgatgagaaa |
324 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
9191082 |
aataaatacgatgagaaa |
9191065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 148 - 258
Target Start/End: Original strand, 8403703 - 8403813
Alignment:
| Q |
148 |
taaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggttgatagagatgaa |
247 |
Q |
| |
|
|||||||||||| | ||| ||||| |||||| ||| | ||||||||||||||||||| |||||||| | ||||||||||||||||| ||||||| || |
|
|
| T |
8403703 |
taaaataaaatagagggatgttgatgtagaaatgagtcacgcgtaagggttggattaatgaagagaataagtggtgatataaacggttaatagagagtaa |
8403802 |
T |
|
| Q |
248 |
taatgaggaat |
258 |
Q |
| |
|
| ||||||||| |
|
|
| T |
8403803 |
tgatgaggaat |
8403813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 103 - 237
Target Start/End: Original strand, 10906588 - 10906722
Alignment:
| Q |
103 |
gtctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggat |
202 |
Q |
| |
|
|||||||||||| || | |||| |||||| ||||||| ||||| |||||||||||| | ||| ||||||||||| ||| || ||||||||||||| |
|
|
| T |
10906588 |
gtctagaatagacgaaagaatagagtatgtccgtaaaacgaataataaaataaaatagagggatattgacgtagaaatgagccacatgtaagggttggat |
10906687 |
T |
|
| Q |
203 |
tagtgaagagatacaatggtgatataaacggttga |
237 |
Q |
| |
|
|| |||| || || ||||||||||||||||||| |
|
|
| T |
10906688 |
taatgaataggtaaggtggtgatataaacggttga |
10906722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 13 - 352
Target Start/End: Complemental strand, 14719 - 14379
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14719 |
gagactttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagagcctagaata |
14620 |
T |
|
| Q |
113 |
gatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagag |
212 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14619 |
gacgagagaataatgtatgttcgtaaaatgaatacgaaaataaaatatagggaagctgacgtagaattgaattacgcataagggttggattagtgaagag |
14520 |
T |
|
| Q |
213 |
atacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataa |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
14519 |
atgcaatggtgatataaacggttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataa |
14420 |
T |
|
| Q |
312 |
atacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14419 |
atacgatgagaaatgataatgtttatatgttagtgatgatg |
14379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 13338 - 13638
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13338 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagaaacta |
13437 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13438 |
gaatagatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgagtaagggttggattagtg |
13537 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatta |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13538 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatccatgatgtgacaaagagtgatgacgaagatattatatatatgtaatta |
13637 |
T |
|
| Q |
308 |
a |
308 |
Q |
| |
|
| |
|
|
| T |
13638 |
a |
13638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 23658881 - 23658528
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
23658881 |
gagcggagactttgcatgtaatgatagtgaataagaaaagaacttgagatcaagaatgaggaatatggtatgatattaggaataaagtttatagattcta |
23658782 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23658781 |
gaatagatgagagaataatgtatgttcgtaaaatgaatagtaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
23658682 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatataca-------- |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
23658681 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatatgtgtg |
23658582 |
T |
|
| Q |
300 |
tgtaatt-aataaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
23658581 |
tgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatg |
23658528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 114 - 297
Target Start/End: Complemental strand, 23658010 - 23657827
Alignment:
| Q |
114 |
atgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagaga |
213 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23658010 |
atgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagaga |
23657911 |
T |
|
| Q |
214 |
tacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatata |
297 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23657910 |
tacaattttgatataaacggttgatagagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatata |
23657827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 29294196 - 29293929
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaa |
120 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| || | |||||||||||| | |||||||| ||| ||||| ||||||||| |||||||||||||||| |
|
|
| T |
29294196 |
atgtaatgataatgaataagaaaacatcttgagactaggaatgaggaataagatatgatatcagggataaattttatagagagcctagaatagatgagaa |
29294097 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataagg---aagttgacgtagaattgaattacgcgtaagggttggattagtgaagagataca |
217 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| | || | ||||| ||| || ||| | |||||||||||||||||| |||||||||| |
|
|
| T |
29294096 |
aatagagtatgcccataaaatgaataataaaataaaataaagggtcgatgttgatgtataaatgagtcccgcgtaagggttggattaatgaagagataag |
29293997 |
T |
|
| Q |
218 |
atggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga |
285 |
Q |
| |
|
||||||| ||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29293996 |
gtggtgatttaaacggttgatatagagtaatgatgaggaatccataatgtgacgaagagtgatgacga |
29293929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 23657807 - 23657753
Alignment:
| Q |
299 |
atgtaattaa-taaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
23657807 |
atgtaattaaataaatacgatgagaaattataatgtttatatgttagtgatgatg |
23657753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1269 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold1269
Description:
Target: scaffold1269; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 320 - 1
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaata |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
320 |
gagactttgtatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatatgatatgatatcaggaataaagtttatagagcctagaata |
221 |
T |
|
| Q |
113 |
gatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagag |
212 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
220 |
gatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacttagaattgaattacgcataagggttggattaatgaagag |
121 |
T |
|
| Q |
213 |
atacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataa |
311 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
120 |
atacaatggtgatataaacgtttgatagagatgaataatgaggattccataatgtgacgaagagtgatgacgaagatattatacatatgtaattaaataa |
21 |
T |
|
| Q |
312 |
atacgatgagaaatgataat |
331 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
20 |
atacgatgagaaatgataat |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 131129 - 130797
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
131129 |
gagcggagagtttgcatgtaatgatagcgaataagaaaacaacttgagaccgagaatgaggaatagggtatgatattaggaataaagtttatagattcta |
131030 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
131029 |
gaatagatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattggtg |
130930 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt- |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
130929 |
aagagatacaatggtgatataaacggttgatatagatgaatagtgaggaatccataatgtgacg-------------aagatattatatatatgtaatta |
130843 |
T |
|
| Q |
307 |
aataaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
130842 |
aataaatacgatgagaaatgataatgtttatatgttagtgatgatg |
130797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 13882025 - 13882349
Alignment:
| Q |
8 |
gagcagagactttgcatgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtcta |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13882025 |
gagcggagactttgcatgtaatgatagcgaataagaaaacaacttgagaccaagaatgaggaatagggtatgatattaggaataaagtttatagattcta |
13882124 |
T |
|
| Q |
108 |
gaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtg |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13882125 |
gaatagatgagagaataatgtatgttcgtaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcttaagggttggattagtg |
13882224 |
T |
|
| Q |
208 |
aagagatacaatggtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt- |
306 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
13882225 |
aagagatacaatggtgata---------------------taatgaggaatccatattgtgacgaagagtgatgacgaagatattatatatatgtaatta |
13882303 |
T |
|
| Q |
307 |
aataaatacgatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13882304 |
aataaatacgatgagaaatgataatgtttatatgttagtgatgatg |
13882349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 51626767 - 51626999
Alignment:
| Q |
13 |
gagactttgcatgtaatgatagcgaataagaaaa-caacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagtctagaat |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
51626767 |
gagactttgtatgtaatgatagcgaataagaaaaacaacttgagaccaggaatgaggaatatggtatgatatcaggaataaagtttatagagcctagaat |
51626866 |
T |
|
| Q |
112 |
agatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaaga |
211 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
51626867 |
agatgagagaataatgtatgttcctaaaatgaatactaaaataaaatatagggaagttgacgtagaattgaattacgcgtaagggttggattaatgaaga |
51626966 |
T |
|
| Q |
212 |
gatacaatggtgatataaacggttgatagagat |
244 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |
|
|
| T |
51626967 |
gatacaatggtgatataaattgttgatagagat |
51626999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 1566849 - 1567166
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaa |
120 |
Q |
| |
|
|||||||| || |||||||||| || ||||| || |||||||||||||||| |||| ||| ||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
1566849 |
atgtaatggtaatgaataagaaagcatcttgagactaagaatgaggaataggatatggtatcagggataaagtttatagagagcctagaatagaagagag |
1566948 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||||||| || ||||||||||| ||| | || |||||||||||||||| |||||||| | || |
|
|
| T |
1566949 |
aataaagtatgtccgtaaaatgaataataaaataaaga-----gacattgacgtagaaatgagtcacacgtaagggttggattaatgaagagacaatgtg |
1567043 |
T |
|
| Q |
221 |
gtgatataaacggttgatagagatgaataatgaggaat-acataa-tgtgacgaagagtgatgacga-agatattatatacatgt-aattaataaatacg |
316 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||| | |||| |||||| |||||||||||||| ||||||||||| |||| || |||||||||| |
|
|
| T |
1567044 |
gtgatataaacggtggatagagggtaataatgaggaatcatataattgtgacaaagagtgatgacgattgatattatatatatgtaaacaaataaatacg |
1567143 |
T |
|
| Q |
317 |
atgagaaatgataatgtttatat |
339 |
Q |
| |
|
||||||||||| ||| ||||||| |
|
|
| T |
1567144 |
atgagaaatgacaatatttatat |
1567166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 239 - 352
Target Start/End: Original strand, 51658661 - 51658775
Alignment:
| Q |
239 |
agagatgaataatgaggaatacataatgtgacgaagagtgatgacgaagatattatatacatgtaatt-aataaatacgatgagaaatgataatgtttat |
337 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
51658661 |
agagatgaataatgaggaatccataatgtgacgaagagtgatgacgaagatattatatatatgtaattaaataaatacgatgagaaatgataatatttat |
51658760 |
T |
|
| Q |
338 |
atgttggtgatgatg |
352 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
51658761 |
atgttagtgatgatg |
51658775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 23 - 339
Target Start/End: Original strand, 23656241 - 23656561
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaa |
120 |
Q |
| |
|
||||||||||| ||||||||||||| |||| || | |||||||||||||| |||||||| ||| ||||||||||||||| |||||||| | |||| |
|
|
| T |
23656241 |
atgtaatgataatgaataagaaaacatattgagactaggaatgaggaataggatatgatatcagggataaagtttatagagagcctagaataaaggagag |
23656340 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
|||| || | | ||||||||||| | |||||||||| | ||| |||||||||||| ||| | | | ||||||||||||||| | |||||||| || |
|
|
| T |
23656341 |
aatagagtgttcccataaaatgaataatgaaataaaatagatggatgttgacgtagaaatgagtcatgtgtaagggttggattaataaagagataaggtg |
23656440 |
T |
|
| Q |
221 |
gtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaa-ttaataaatacgat |
318 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||| || | ||||||||| || |
|
|
| T |
23656441 |
atgatataaacggttgatagagagtaatgatgaggaatccataatgtgacgaagagtgatgacgattgatattatatatatgaaagtaaataaatacaat |
23656540 |
T |
|
| Q |
319 |
gagaaatgataatgtttatat |
339 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
23656541 |
gagaaatgataatatttatat |
23656561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 23 - 285
Target Start/End: Original strand, 44586241 - 44586505
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagag--tctagaatagatgagaa |
120 |
Q |
| |
|
|||||||| || ||||||||||||| ||||| | |||||||||||||||| |||||| | || ||||||||| ||||| |||| |||| | |||| |
|
|
| T |
44586241 |
atgtaatgttaatgaataagaaaacatcttgagcctaagaatgaggaataggatatgatgtcagagataaagtttttagagagtctataataaaggagag |
44586340 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
|||| |||| | | ||||||||||| | |||||||||| | ||| |||||| ||||| ||| | | ||||||||||||||||| | |||||||| || |
|
|
| T |
44586341 |
aatagagtatttccataaaatgaataatgaaataaaatagagggatgttgacatagaaatgagtcatgcgtaagggttggattaataaagagataaggtg |
44586440 |
T |
|
| Q |
221 |
gtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga |
285 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
44586441 |
gtgatataaacggttgatagagagtaatgatgaggaatccatactgtaacaaagagtgatgacga |
44586505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 179
Target Start/End: Complemental strand, 24786454 - 24786333
Alignment:
| Q |
59 |
aagaatgaggaatagggtatgatattaggaataaagtttataga--gtctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaa |
156 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||||| |||||| | ||||||||||||||| |||| | | || || | ||||||| ||||||||| |
|
|
| T |
24786454 |
aagaatgaggaatagagtatgatatca-gaataaagtatatagattgcctagaatagatgagagaatagagcacgtctgtgagatgaataataaaataaa |
24786356 |
T |
|
| Q |
157 |
atataaggaagttgacgtagaat |
179 |
Q |
| |
|
||| | ||| ||||||||||||| |
|
|
| T |
24786355 |
ataaagggatgttgacgtagaat |
24786333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 32251974 - 32252034
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatat |
83 |
Q |
| |
|
||||||||||| |||| |||||||| ||||| || || |||||||| ||||||||||||| |
|
|
| T |
32251974 |
atgtaatgataatgaattagaaaacatcttgagactaaaaatgaggattagggtatgatat |
32252034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0737 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0737
Description:
Target: scaffold0737; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 23 - 334
Target Start/End: Original strand, 3451 - 3760
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagag--tctagaatagatgagaa |
120 |
Q |
| |
|
||||||||||| |||| |||||||| ||||| || | |||||||||||||| |||||||| ||| ||||||||||||||| |||||||||| ||| |
|
|
| T |
3451 |
atgtaatgataatgaatgagaaaacatcttgacactaggaatgaggaataggatatgatatcagggataaagtttatagagaacctagaatagagcagag |
3550 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
|||| ||||| | |||||| |||| |||||||||||||| || |||||||||||| ||| | |||| || ||| ||| | |||||||||| || |
|
|
| T |
3551 |
aatagagtatgcccataaaataaataataaaataaaatataggggtgttgacgtagaaatgagtcacgcacaaaagttcgatgaatgaagagataaggtg |
3650 |
T |
|
| Q |
221 |
gtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga-agatattatatacatgtaattaataaatacgatg |
319 |
Q |
| |
|
|||||||||||||| |||||||| ||| |||||||| |||||||||||||||||||| ||| | ||||||||||| ||| || ||||||||| |
|
|
| T |
3651 |
gtgatataaacggtagatagagagtaatgatgaggaaaccataatgtgacgaagagtgacgacaattgatattatata-----aataaacgaatacgatg |
3745 |
T |
|
| Q |
320 |
agaaatgataatgtt |
334 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3746 |
agaaatgataatgtt |
3760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 320 - 162
Alignment:
| Q |
100 |
agagtctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttg |
199 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||| | ||| |||| || |||||||||||| | ||| |||||||||||| ||| | ||||||||| ||| |
|
|
| T |
320 |
agagcctagaatagatgagagaataaaatatgtccttaatatgattaataaaataaaatagagggatgttgacgtagaaatgagtcacgcgtaagagtta |
221 |
T |
|
| Q |
200 |
gattagtgaagagatacaatggtgatataaacggttgatagagatgaataatgaggaat |
258 |
Q |
| |
|
|| || |||||| ||| | |||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
220 |
gaataatgaagaaataaagtggtgatataaatggttgatagagagtaatgatgaggaat |
162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 258
Target Start/End: Complemental strand, 24757841 - 24757683
Alignment:
| Q |
100 |
agagtctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttg |
199 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||| | ||| |||| || |||||||||||| | ||| |||||||||||| ||| | ||||||||| ||| |
|
|
| T |
24757841 |
agagcctagaatagatgagagaataaaatatgtccttaatatgattaataaaataaaatagagggatgttgacgtagaaatgagtcacgcgtaagagtta |
24757742 |
T |
|
| Q |
200 |
gattagtgaagagatacaatggtgatataaacggttgatagagatgaataatgaggaat |
258 |
Q |
| |
|
|| || |||||| ||| | |||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
24757741 |
gaataatgaagaaataaagtggtgatataaatggttgatagagagtaatgatgaggaat |
24757683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 24615676 - 24615523
Alignment:
| Q |
105 |
ctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggatta |
204 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||| |||| || |||||||||||| | ||| |||||||||||| ||| | ||||||||| ||| || || |
|
|
| T |
24615676 |
ctagaatagatgagagaataaaatatgtccttaatatgattaataaaataaaatagagggatgttgacgtagaaatgagtcacgcgtaagagttagaata |
24615577 |
T |
|
| Q |
205 |
gtgaagagatacaatggtgatataaacggttgatagagatgaataatgaggaat |
258 |
Q |
| |
|
|||||| ||| | |||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
24615576 |
atgaagaaataaagtggtgatataaatggttgatagagagtaatgatgaggaat |
24615523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 24712074 - 24711921
Alignment:
| Q |
105 |
ctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggatta |
204 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||| |||| || |||||||||||| | ||| |||||||||||| ||| | ||||||||| ||| || || |
|
|
| T |
24712074 |
ctagaatagatgagagaataaaatatgtccttaatatgattaataaaataaaatagagggatgttgacgtagaaatgagtcacgcgtaagagttagaata |
24711975 |
T |
|
| Q |
205 |
gtgaagagatacaatggtgatataaacggttgatagagatgaataatgaggaat |
258 |
Q |
| |
|
|||||| ||| | |||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
24711974 |
atgaagaaataaagtggtgatataaatggttgatagagagtaatgatgaggaat |
24711921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 24745070 - 24744917
Alignment:
| Q |
105 |
ctagaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggatta |
204 |
Q |
| |
|
||||||||||||||| ||||| ||||| | ||| |||| || |||||||||||| | ||| |||||||||||| ||| | ||||||||| ||| || || |
|
|
| T |
24745070 |
ctagaatagatgagagaataaaatatgtccttaatatgattaataaaataaaatagagggatgttgacgtagaaatgagtcacgcgtaagagttagaata |
24744971 |
T |
|
| Q |
205 |
gtgaagagatacaatggtgatataaacggttgatagagatgaataatgaggaat |
258 |
Q |
| |
|
|||||| ||| | |||||||||||| |||||||||||| ||| ||||||||| |
|
|
| T |
24744970 |
atgaagaaataaagtggtgatataaatggttgatagagagtaatgatgaggaat |
24744917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 24831927 - 24832042
Alignment:
| Q |
140 |
atgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggttgata |
239 |
Q |
| |
|
||||||| |||||||||||| | ||| |||| |||||||| || | |||||||||| | || || ||||||||||| |||||||| ||| ||| ||||| |
|
|
| T |
24831927 |
atgaataataaaataaaataaagggatgttggcgtagaat-gagtcacgcgtaaggagttgactaatgaagagatacgatggtgatgtaagcggatgata |
24832025 |
T |
|
| Q |
240 |
gagatgaataatgagga |
256 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
24832026 |
gagagtaatgatgagga |
24832042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 11556260 - 11555997
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaagtttatagagt--ctagaatagatgagaa |
120 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| | | |||||||||||| | |||||||| || |||| |||||||||| ||| |||| | |||| |
|
|
| T |
11556260 |
atgtaatgataatgaataagaaaacatcttgagattaggaatgaggaataagatatgatatcagagataa-gtttatagagagcctaaaataaaggagag |
11556162 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
||| |||| | | ||||||||||| | || ||||||| | ||| |||||||||||| ||| | | |||||||||||||||| | |||||||| || |
|
|
| T |
11556161 |
aattgagtatttccataaaatgaataatgaattaaaatagagggatgttgacgtagaaatgagtcatgcgtaagggttggattgataaagagataaggtg |
11556062 |
T |
|
| Q |
221 |
gtgatataaacggttgatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga |
285 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| |||| |||| ||| || |||||||||||||| |
|
|
| T |
11556061 |
gtgatataaatggttgatagagagtaatgatgatgaatccatactgtcacaaagagtgatgacga |
11555997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 18231373 - 18231522
Alignment:
| Q |
136 |
taaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatggtgatataaacggtt |
235 |
Q |
| |
|
||||||||||| | |||||||||| | ||| ||| |||||| ||| | | ||||||||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
18231373 |
taaaatgaataatgaaataaaatagagggatcttggtgtagaaatgagtcatgcgtaagggttggattaataaagagataaggtggtgatataaacggtt |
18231472 |
T |
|
| Q |
236 |
gatagagatgaataatgaggaatacataatgtgacgaagagtgatgacga |
285 |
Q |
| |
|
|||||||| ||| ||||||||| |||| ||| || |||||||||||||| |
|
|
| T |
18231473 |
gatagagagtaatgatgaggaatccatactgtaacaaagagtgatgacga |
18231522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 3576240 - 3576311
Alignment:
| Q |
264 |
atgtgacgaagagtgatgacga-agatattatatacatgta-attaataaatacgatgagaaatgataatgt |
333 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||||| || |||||||||||||||| ||||| |||| |
|
|
| T |
3576240 |
atgtgacgaagagtgatgacgattgattttatataaatgtatataaataaatacgatgagagatgatgatgt |
3576311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 213
Target Start/End: Complemental strand, 12229116 - 12229038
Alignment:
| Q |
135 |
gtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagaga |
213 |
Q |
| |
|
|||| ||||||| |||||||||||| ||| ||||| |||||| ||| | ||||||||||||||| ||| |||||||| |
|
|
| T |
12229116 |
gtaagatgaataataaaataaaatagtgggatgttgatgtagaaatgagtcacgcgtaagggttggtttaatgaagaga |
12229038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 16284817 - 16284956
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatatta-ggaataaagtttataga--gtctagaatagatgaga |
119 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||| || |||||||| |||||| |||||||| | || ||||||| |||||| | || |||||||||||| |
|
|
| T |
16284817 |
atgtaacgataatgaataagaaaatatcttgagactgagaatgagaaataggatatgatatcaggggataaagtatatagaaggccttgaatagatgaga |
16284916 |
T |
|
| Q |
120 |
aaataatgtatgttcgtaaaatgaatactaaaataaaata |
159 |
Q |
| |
|
|||| ||| || || | |||||||||||||||||||| |
|
|
| T |
16284917 |
gaatagagtacgtctgtgagatgaatactaaaataaaata |
16284956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 124
Target Start/End: Original strand, 13886 - 13988
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaag--tttatagagtctagaatagatgagaa |
120 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| | ||||||||||||||||| |||||||||| | ||||||| | |||||| |||||||||||||||| |
|
|
| T |
13886 |
atgttatgataacgaataagtaaacaacttaagaccaagaatgaggaatatggtatgatatca-taataaagtatatatagatactagaatagatgagaa |
13984 |
T |
|
| Q |
121 |
aata |
124 |
Q |
| |
|
|||| |
|
|
| T |
13985 |
aata |
13988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0094 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0094
Description:
Target: scaffold0094; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 230
Target Start/End: Original strand, 4482 - 4690
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattaggaataaag--tttatagagtctagaatagatgagaa |
120 |
Q |
| |
|
|||| |||||| |||||||| ||||||||| | || |||||||||||||| |||||||||| | ||||||| | |||||| ||||||||||||||| |
|
|
| T |
4482 |
atgttatgataacgaataagtaaacaacttaagactaagaatgaggaatatggtatgatatca-taataaagtatatatagatcctagaatagatgagag |
4580 |
T |
|
| Q |
121 |
aataatgtatgttcgtaaaatgaatactaaaataaaatataaggaagttgacgtagaattgaattacgcgtaagggttggattagtgaagagatacaatg |
220 |
Q |
| |
|
|||| ||||| || | ||| ||| |||||||||||| | || |||| ||||| ||||| || |||| |||||||||| ||| | |||| ||| |
|
|
| T |
4581 |
aataggatatgtctgtgagatggataataaaataaaatagagggttaatgacatagaaatgaatcgcgtgtaatggttggattaatgatgggataatatg |
4680 |
T |
|
| Q |
221 |
gtgatataaa |
230 |
Q |
| |
|
|||||||||| |
|
|
| T |
4681 |
gtgatataaa |
4690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0145 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0145
Description:
Target: scaffold0145; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 159
Target Start/End: Complemental strand, 12900 - 12761
Alignment:
| Q |
23 |
atgtaatgatagcgaataagaaaacaacttgataccaagaatgaggaatagggtatgatattag-gaataaagtttataga--gtctagaatagatgaga |
119 |
Q |
| |
|
|||||| |||| ||||||||||| | ||||| || |||||||| |||||| |||||||| || | ||||||| |||||| | || |||||||||||| |
|
|
| T |
12900 |
atgtaacgataatgaataagaaaatatcttgagactgagaatgagaaataggatatgatatcagaggataaagtatatagaaggccttgaatagatgaga |
12801 |
T |
|
| Q |
120 |
aaataatgtatgttcgtaaaatgaatactaaaataaaata |
159 |
Q |
| |
|
|||| ||| || || | |||||||||||||||||||| |
|
|
| T |
12800 |
gaatagagtacgtctgtgagatgaatactaaaataaaata |
12761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 28342 - 28378
Alignment:
| Q |
316 |
gatgagaaatgataatgtttatatgttggtgatgatg |
352 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
28342 |
gatgagaaatgatgatgtttatatgttagtgatgatg |
28378 |
T |
|
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Target: scaffold0057 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 41074 - 41022
Alignment:
| Q |
107 |
agaatagatgagaaaataatgtatgttcgtaaaatgaatactaaaataaaata |
159 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||| ||||| |||||||||||| |
|
|
| T |
41074 |
agaatagatgagagaatagagtatgtccgtaaaacgaataataaaataaaata |
41022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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