View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0321_low_9 (Length: 285)

Name: NF0321_low_9
Description: NF0321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0321_low_9
NF0321_low_9
[»] chr4 (11 HSPs)
chr4 (9-285)||(13268020-13268296)
chr4 (11-285)||(18554559-18554828)
chr4 (168-285)||(12230809-12230926)
chr4 (167-280)||(13559360-13559473)
chr4 (171-285)||(15870945-15871059)
chr4 (174-285)||(19727534-19727645)
chr4 (171-285)||(15888520-15888634)
chr4 (173-285)||(17419482-17419594)
chr4 (183-228)||(13235281-13235326)
chr4 (180-216)||(9886991-9887027)
chr4 (180-216)||(20872223-20872259)
[»] chr6 (6 HSPs)
chr6 (11-285)||(19544983-19545252)
chr6 (173-285)||(14746551-14746663)
chr6 (173-226)||(22395459-22395512)
chr6 (168-220)||(26587843-26587895)
chr6 (252-285)||(22395516-22395549)
chr6 (168-220)||(26588160-26588212)
[»] scaffold0094 (1 HSPs)
scaffold0094 (11-285)||(2339-2607)
[»] chr2 (3 HSPs)
chr2 (10-242)||(18985111-18985343)
chr2 (168-285)||(29718092-29718209)
chr2 (156-268)||(26861195-26861307)
[»] chr8 (5 HSPs)
chr8 (10-285)||(10453908-10454184)
chr8 (158-282)||(15727758-15727885)
chr8 (228-284)||(17861385-17861441)
chr8 (235-285)||(1683231-1683281)
chr8 (253-285)||(1681193-1681225)
[»] chr3 (11 HSPs)
chr3 (168-285)||(19186783-19186900)
chr3 (171-285)||(21977106-21977220)
chr3 (171-285)||(21999537-21999651)
chr3 (171-285)||(22161732-22161846)
chr3 (167-280)||(10341062-10341175)
chr3 (168-285)||(16357816-16357931)
chr3 (167-261)||(10302744-10302838)
chr3 (168-282)||(16928556-16928668)
chr3 (9-80)||(17958996-17959067)
chr3 (9-78)||(14057515-14057584)
chr3 (117-188)||(16942023-16942094)
[»] scaffold0385 (1 HSPs)
scaffold0385 (168-285)||(16146-16263)
[»] scaffold0118 (1 HSPs)
scaffold0118 (182-285)||(11957-12060)
[»] chr7 (6 HSPs)
chr7 (167-280)||(9692983-9693096)
chr7 (173-285)||(16068058-16068170)
chr7 (9-78)||(15864941-15865010)
chr7 (9-78)||(48379111-48379180)
chr7 (168-224)||(18466887-18466943)
chr7 (117-188)||(48379001-48379071)
[»] chr5 (7 HSPs)
chr5 (180-285)||(25791829-25791934)
chr5 (150-274)||(14137962-14138086)
chr5 (216-280)||(23909173-23909237)
chr5 (170-261)||(32948837-32948927)
chr5 (168-278)||(13938970-13939078)
chr5 (180-225)||(25756310-25756355)
chr5 (171-261)||(25581329-25581419)
[»] scaffold0364 (1 HSPs)
scaffold0364 (167-261)||(14588-14682)
[»] scaffold0290 (1 HSPs)
scaffold0290 (180-276)||(11842-11938)
[»] scaffold0010 (1 HSPs)
scaffold0010 (173-285)||(143104-143216)
[»] chr1 (3 HSPs)
chr1 (167-285)||(21496564-21496681)
chr1 (9-178)||(51624697-51624868)
chr1 (182-219)||(17451472-17451509)
[»] scaffold0408 (1 HSPs)
scaffold0408 (173-285)||(14986-15098)
[»] scaffold1043 (1 HSPs)
scaffold1043 (173-285)||(516-629)
[»] scaffold0207 (1 HSPs)
scaffold0207 (171-261)||(737-827)
[»] scaffold0218 (1 HSPs)
scaffold0218 (9-188)||(16604-16784)
[»] scaffold0091 (1 HSPs)
scaffold0091 (9-188)||(31256-31437)
[»] scaffold0003 (1 HSPs)
scaffold0003 (9-188)||(132790-132970)
[»] scaffold0381 (1 HSPs)
scaffold0381 (180-216)||(11517-11553)
[»] scaffold0063 (2 HSPs)
scaffold0063 (117-188)||(26014-26085)
scaffold0063 (9-78)||(25916-25985)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 13268296 - 13268020
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggagg 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  13268296 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacgtggaaaatagagaagagggtagg 13268197  T
Q  109 agaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatctta 208  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13268196 agaaaaggagaaaccctagctgggacggaatcaagccaaagctggaattttcaagggaatcgaggtaagggggagaatctttgcactttagggtatctta 13268097  T
Q  209 atttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatgatga 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13268096 atttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgacgagagaatgatga 13268020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 18554559 - 18554828
Alignment:
Q  11 agaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggaggag 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| ||| ||| | |   | |||||||||||||||||||||||    
T  18554559 agaaaattataacaagtgattgacccaattataaatagaaacattaggagttagaagggtcactcttgttgattgttgaaaatagagaagaggggaggag 18554658  T
Q  111 aaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||||||||||||||||||||    
T  18554659 aaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcgaagggatcgaggtaagggggagaatctttgcactttagggtatcttaat 18554758  T
Q  211 ttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatgatga 285  Q
     ||||||  ||||||| ||     ||||||||  |||||| ||||||||||||||||||||||||| ||||||||    
T  18554759 ctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaattttgatgagaaaatgatga 18554828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 12230926 - 12230809
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 267  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||  |||||| | ||||||||||||||    
T  12230926 tcgaggtaagggggataatctttgcactttagggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtgaatt 12230827  T
Q  268 ttgatgagagaatgatga 285  Q
    ||||||||||||||||||    
T  12230826 ttgatgagagaatgatga 12230809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 13559360 - 13559473
Alignment:
Q  167 atcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaat 266  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||  |||||| |||||||||| |||     
T  13559360 atcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaag 13559459  T
Q  267 tttgatgagagaat 280  Q
    ||||||||||||||    
T  13559460 tttgatgagagaat 13559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 15870945 - 15871059
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttg 270  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||  ||||||||||| |||||||    
T  15870945 aggtaagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaattttg 15871044  T
Q  271 atgagagaatgatga 285  Q
    ||||| |||||||||    
T  15871045 atgagtgaatgatga 15871059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 174 - 285
Target Start/End: Original strand, 19727534 - 19727645
Alignment:
Q  174 taaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatg 273  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |  |||||  |||||||||||||||||||| |    
T  19727534 taaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgacg 19727633  T
Q  274 agagaatgatga 285  Q
    ||||||||||||    
T  19727634 agagaatgatga 19727645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 171 - 285
Target Start/End: Original strand, 15888520 - 15888634
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttg 270  Q
    |||||||  ||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||| || | ||| ||||||||||| ||| |||    
T  15888520 aggtaagagggagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaatattg 15888619  T
Q  271 atgagagaatgatga 285  Q
    ||||| |||||||||    
T  15888620 atgagtgaatgatga 15888634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 17419594 - 17419482
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgat 272  Q
    |||||| | ||||||||||||||||||||||||||||| ||||| || ||  || | ||||||||||| |  |||||  | |||||||||||||||||||    
T  17419594 gtaaggggaagaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactattatgatgtgaattttgat 17419495  T
Q  273 gagagaatgatga 285  Q
    |||||||||||||    
T  17419494 gagagaatgatga 17419482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 183 - 228
Target Start/End: Complemental strand, 13235326 - 13235281
Alignment:
Q  183 gaatctttgcactttagggtatcttaatttatgatgggagggtttt 228  Q
    |||||||||||||||||||||| ||||||||||| || ||||||||    
T  13235326 gaatctttgcactttagggtatattaatttatgacggaagggtttt 13235281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 9887027 - 9886991
Alignment:
Q  180 ggagaatctttgcactttagggtatcttaatttatga 216  Q
    ||||||||||||||||||||||||||||||| |||||    
T  9887027 ggagaatctttgcactttagggtatcttaatatatga 9886991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 20872223 - 20872259
Alignment:
Q  180 ggagaatctttgcactttagggtatcttaatttatga 216  Q
    |||||||||||||||||| |||||||||||| |||||    
T  20872223 ggagaatctttgcacttttgggtatcttaatatatga 20872259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 19544983 - 19545252
Alignment:
Q  11 agaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggaggag 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||| ||| ||| | ||| | |||||||||||||||||||||||    
T  19544983 agaaaattataacaagtgattgacccaattataaatagaaacattaggagttagaagggtcactcttgttgaacgttgaaaatagagaagaggggaggag 19545082  T
Q  111 aaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaat 210  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||||    
T  19545083 aaaaggagaaaccctagctgcgacggaatcaagccaaaactggaattttcgaaggaatcgaggtaagggggagaatctttgcactttagggtatcttaat 19545182  T
Q  211 ttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatgatga 285  Q
     ||||||  ||||||| ||     ||||||||  |||||| |||||| |||||||||||||||||| ||||||||    
T  19545183 ctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaattttgatgagaaaatgatga 19545252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 14746663 - 14746551
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgat 272  Q
    |||||| |||||||||||||||| |||||||||||||| ||||| | || ||||  |||||||||||| |  |||||  |||||||||||||||||| ||    
T  14746663 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14746564  T
Q  273 gagagaatgatga 285  Q
    |||||||||||||    
T  14746563 gagagaatgatga 14746551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 22395459 - 22395512
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggtt 226  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||    
T  22395459 gtaagggggagagtctttgcactttagggtatcttaatatatgatgggagggtt 22395512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 26587895 - 26587843
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatggg 220  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| |||||||||    
T  26587895 tcgaggtaaaggggagaatcttttcactttagggtatcttaatctatgatggg 26587843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 22395516 - 22395549
Alignment:
Q  252 tgttatgatgtgaattttgatgagagaatgatga 285  Q
    |||||||||||||||||||||||||||| |||||    
T  22395516 tgttatgatgtgaattttgatgagagaaagatga 22395549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 26588212 - 26588160
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatggg 220  Q
    ||||||||||| ||||  || || ||||||||||||||||||| |||||||||    
T  26588212 tcgaggtaagggggaggttcctttcactttagggtatcttaatctatgatggg 26588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 2339 - 2607
Alignment:
Q  11 agaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggaggag 110  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| || ||| |||||| ||||||||| ||| | |||||||||||||||||||||||    
T  2339 agaaaattataacaagtgattgacccaattataaatagaaacattaggagttataagggtcacttttgctgaacgttgaaaatagagaagaggggaggag 2438  T
Q  111 aaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaat 210  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2439 aaaaggagaaaccctagctgtgacggaatcaagccaaagctggaattttcaaaggaatcgaggtaagggggagaatctttgca-tttagggtatcttaat 2537  T
Q  211 ttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatgatga 285  Q
     ||||||  |||||     ||| |||||||||  |||||| || ||||||||||||||||| |||| ||||||||    
T  2538 ctatgatatgaggg-----ttatattttaatatgttgttgctggtatgatgtgaattttgacgagaaaatgatga 2607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 18985111 - 18985343
Alignment:
Q  10 aagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggagga 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||  |||||| | ||| ||||||||||||||||||||||||    
T  18985111 aagaaaattataacaagtgattgacccaattataaatagaaacattaggatttagaagggtcgcttttgttgaacgtggaaaatagagaagaggggagga 18985210  T
Q  110 gaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaa 209  Q
    |||||||||||||||||||||| |||||||||||| |||| |||||||| | | ||||||||| ||||| ||||||||||||||| |||||||||| |||    
T  18985211 gaaaaggagaaaccctagctgcaacggaatcaagctaaagttggaatttgcgaaggaatcgagataagggggagaatctttgcacattagggtatcgtaa 18985310  T
Q  210 tttatgatgggagggttttcttaaattttaata 242  Q
    | |||||| |||||||| | |||||||||||||    
T  18985311 tctatgataggagggttgtattaaattttaata 18985343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 29718092 - 29718209
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 267  Q
    ||||||||||| ||||||| |||||||||||| |||||||||| |||||||| |||||| |||||||||||||||  |||||||||||||||||||||||    
T  29718092 tcgaggtaagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaatt 29718191  T
Q  268 ttgatgagagaatgatga 285  Q
    ||||||||||||||||||    
T  29718192 ttgatgagagaatgatga 29718209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 156 - 268
Target Start/End: Original strand, 26861195 - 26861307
Alignment:
Q  156 ttttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgtt 255  Q
    ||||||| ||| ||||||||||| ||||| |||||||||||||||||||||||||  ||||||| |||||| | ||||||||||||| ||| ||| ||||    
T  26861195 ttttcaaaggattcgaggtaagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgtt 26861294  T
Q  256 atgatgtgaattt 268  Q
    ||| ||| |||||    
T  26861295 atggtgttaattt 26861307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 10453908 - 10454184
Alignment:
Q  10 aagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggagga 109  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||| || |||||||||| ||||||| | | | || ||||  |||||||| ||||||    
T  10453908 aagaaaattataacaagtgactgacccaaatataaatagaaacattaggagttagaagggtcacttttgttgaccgtgaaaaagggagaagagaggagga 10454007  T
Q  110 gaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttc-aagggaatcgaggtaaggaggagaatctttgcactttagggtatctta 208  Q
    || ||||||||||||||| ||||||| |||||||||||||||| || |||| ||  |||||||||||||| | |||||||||| ||||||||||||||||    
T  10454008 gataaggagaaaccctagttgcgacgaaatcaagccaaagctgaaaatttccaaaagaatcgaggtaaggggaagaatctttgaactttagggtatctta 10454107  T
Q  209 atttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatgatga 285  Q
    || ||||||||| ||||| || || |||||||||  || ||| ||||||| ||||||||||||||||||||||||||    
T  10454108 atctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaattttgatgagagaatgatga 10454184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 282
Target Start/End: Complemental strand, 15727885 - 15727758
Alignment:
Q  158 ttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgg------gagggttttcttaaattttaatacattgttgt 251  Q
    ||||| ||| ||||||||||| |||||||| || ||||||||||||||||||| ||||||||      ||||||| | ||| |||||||||   ||||||    
T  15727885 ttcaaaggattcgaggtaagggggagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaata---tgttgt 15727789  T
Q  252 tgttatgatgtgaattttgatgagagaatga 282  Q
    |||||||||||||||||| ||||||| ||||    
T  15727788 tgttatgatgtgaatttttatgagaggatga 15727758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 284
Target Start/End: Original strand, 17861385 - 17861441
Alignment:
Q  228 tcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatgatg 284  Q
    ||||||||||||| |  |||||  |||||||| ||||||||||||||||||||||||    
T  17861385 tcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatg 17861441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 1683281 - 1683231
Alignment:
Q  235 ttttaatacattgttgttgttatgatgtgaattttgatgagagaatgatga 285  Q
    ||||||||  ||||||  |||||||||||||||||||||||||| ||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatga 1683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 1681225 - 1681193
Alignment:
Q  253 gttatgatgtgaattttgatgagagaatgatga 285  Q
    |||||||||||||||||||||||||| ||||||    
T  1681225 gttatgatgtgaattttgatgagagactgatga 1681193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 94; Significance: 6e-46; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 19186900 - 19186783
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||||||||||||||||    
T  19186900 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaatt 19186801  T
Q  268 ttgatgagagaatgatga 285  Q
    ||||| || |||||||||    
T  19186800 ttgatcagtgaatgatga 19186783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 21977220 - 21977106
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttg 270  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  21977220 aggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttg 21977121  T
Q  271 atgagagaatgatga 285  Q
    ||||| |||||||||    
T  21977120 atgagtgaatgatga 21977106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 21999651 - 21999537
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttg 270  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  21999651 aggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttg 21999552  T
Q  271 atgagagaatgatga 285  Q
    ||||| |||||||||    
T  21999551 atgagtgaatgatga 21999537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 22161846 - 22161732
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttg 270  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  22161846 aggtaaggggtagaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaattttg 22161747  T
Q  271 atgagagaatgatga 285  Q
    ||||| |||||||||    
T  22161746 atgagtgaatgatga 22161732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 280
Target Start/End: Complemental strand, 10341175 - 10341062
Alignment:
Q  167 atcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaat 266  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||| |||| ||||||| || |||||||||||||||  |||||| |||||||||| ||||    
T  10341175 atcgaagtaagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaat 10341076  T
Q  267 tttgatgagagaat 280  Q
    ||||||||||||||    
T  10341075 tttgatgagagaat 10341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 168 - 285
Target Start/End: Original strand, 16357816 - 16357931
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 267  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| || | ||| ||||||||||| |||     
T  16357816 tcgaggtaagg-ggagaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaatgcacttttgctgttatgatgtaaatg 16357913  T
Q  268 ttgatgagagaatgatga 285  Q
    |||||||| |||||||||    
T  16357914 ttgatgagtgaatgatga 16357931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 10302838 - 10302744
Alignment:
Q  167 atcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatg 261  Q
    ||||| ||| || ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  |||||| ||||||||||    
T  10302838 atcgaagtacgggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 282
Target Start/End: Complemental strand, 16928668 - 16928556
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgg-gagggttttcttaaattttaatacattgttgttgttatgatgtgaat 266  Q
    |||||||||||  |||||| ||| |||||||  |||||||||| ||||||||  |||||| |||||||||||||||   ||||||||||||| |||||||    
T  16928668 tcgaggtaagggagagaatattttcactttaaagtatcttaatctatgatggaaagggttgtcttaaattttaata---tgttgttgttatggtgtgaat 16928572  T
Q  267 tttgatgagagaatga 282  Q
    || || ||||| ||||    
T  16928571 ttggacgagaggatga 16928556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 17958996 - 17959067
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgct 80  Q
    ||||||| |||||||| ||||||||||||  ||||||||||||||||| || ||||||| || |||||||||    
T  17958996 gaagaaagttataacatgtgattgacccaagtataaatagaaacattaggagttagaagagtcacttttgct 17959067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 14057515 - 14057584
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttg 78  Q
    ||||||| |||||||| ||||||||||||   |||||||||||||||| || ||||||| || |||||||    
T  14057515 gaagaaatttataacatgtgattgacccaagcataaatagaaacattaggagttagaagagtcacttttg 14057584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 16942023 - 16942094
Alignment:
Q  117 agaaaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaaggaggagaatct 188  Q
    ||||||||||| |||||| | |||||||| ||||||||| ||||| | | ||||||||||||| |||||||||    
T  16942023 agaaaccctagttgcgactggatcaagcc-aagctggaaatttcataagaaatcgaggtaaggcggagaatct 16942094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 16263 - 16146
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaatt 267  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||||||||||    
T  16263 tcgaggtaagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaatt 16164  T
Q  268 ttgatgagagaatgatga 285  Q
    |||||||| |||||||||    
T  16163 ttgatgagtgaatgatga 16146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 12060 - 11957
Alignment:
Q  182 agaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaatg 281  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatg 11961  T
Q  282 atga 285  Q
    ||||    
T  11960 atga 11957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 167 - 280
Target Start/End: Original strand, 9692983 - 9693096
Alignment:
Q  167 atcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaat 266  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||  |||||| |||||||||| |||     
T  9692983 atcgaggtaaggaggagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaag 9693082  T
Q  267 tttgatgagagaat 280  Q
    ||||||||||||||    
T  9693083 tttgatgagagaat 9693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 16068058 - 16068170
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgat 272  Q
    |||||| |||||||||||||| |||||||||||||||| ||||| ||||||||| |||||||||||||||  |||||  |||||||||||||||||||||    
T  16068058 gtaagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgat 16068157  T
Q  273 gagagaatgatga 285  Q
    |||| ||||||||    
T  16068158 gagaaaatgatga 16068170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 15864941 - 15865010
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttg 78  Q
    ||||||| |||||||| ||||||||||||  ||||||||||||||||| || ||||||| || |||||||    
T  15864941 gaagaaagttataacatgtgattgacccaagtataaatagaaacattaggagttagaagagtcacttttg 15865010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 48379180 - 48379111
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttg 78  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||||  | ||||||| || |||||||    
T  48379180 gaagaaagttataacatgtgattgacccaagtataaatagaaacattagaagttagaagagtcacttttg 48379111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 18466887 - 18466943
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggaggg 224  Q
    |||| |||||| |||||||||||   |||||||||||||||| |||||| |||||||    
T  18466887 tcgatgtaagggggagaatctttttcctttagggtatcttaaattatgacgggaggg 18466943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 48379071 - 48379001
Alignment:
Q  117 agaaaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaaggaggagaatct 188  Q
    ||||||||||| |||||||| |||||||| ||||||||| ||||| | | ||||||||||||| |||||||||    
T  48379071 agaaaccctagttgcgacgggatcaagcc-aagctggaaatttcagaagaaatcgaggtaagg-ggagaatct 48379001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 180 - 285
Target Start/End: Complemental strand, 25791934 - 25791829
Alignment:
Q  180 ggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaa 279  Q
    |||||||||||| |||||||||||||||||| |||||  |||||||||||||||||||||| |  |||||  |||||||||||||| |||||||||||||    
T  25791934 ggagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaa 25791835  T
Q  280 tgatga 285  Q
    ||||||    
T  25791834 tgatga 25791829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 150 - 274
Target Start/End: Complemental strand, 14138086 - 14137962
Alignment:
Q  150 ctggaattttcaagggaatcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgtt 249  Q
    ||||||||||| | ||| ||||||||||| ||| ||||| |  |||||||||||||||| | | ||||||||||||| |||||||| ||||||  |||||    
T  14138086 ctggaattttcgaaggattcgaggtaagggggacaatctctttactttagggtatcttattatttgatgggagggttgtcttaaatcttaatatgttgtt 14137987  T
Q  250 gttgttatgatgtgaattttgatga 274  Q
    ||||||||| |||||||||||||||    
T  14137986 gttgttatgctgtgaattttgatga 14137962  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 216 - 280
Target Start/End: Complemental strand, 23909237 - 23909173
Alignment:
Q  216 atgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgagagaat 280  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  23909237 atgggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatgagagaat 23909173  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 32948927 - 32948837
Alignment:
Q  170 gaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatg 261  Q
    ||||||||| |||||||||||||||||||| |||||| ||| | ||||||||||||| |||| ||||||||||  |||||| ||||||||||    
T  32948927 gaggtaagggggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaattttaatatgttgttgctgttatgatg 32948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 278
Target Start/End: Complemental strand, 13939078 - 13938970
Alignment:
Q  168 tcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtga-at 266  Q
    ||||||||||  | |||||||||||||||||| |||||||||| |||||| ||| ||| |  |||| | |||| |  |||||||||||||||||||| ||    
T  13939078 tcgaggtaagaggaagaatctttgcactttagtgtatcttaatatatgat-ggacggtgt--ttaattcttaagatgttgttgttgttatgatgtgagat 13938982  T
Q  267 tttgatgagaga 278  Q
    ||||||||||||    
T  13938981 tttgatgagaga 13938970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 25756310 - 25756355
Alignment:
Q  180 ggagaatctttgcactttagggtatcttaatttatgatgggagggt 225  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||    
T  25756310 ggagaatctttgcactttagggtatcttaatctatgacaggagggt 25756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 25581329 - 25581419
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaa-tacattgttgttgttatgatg 261  Q
    |||||||| ||||||||||| |||||||||||||||| || |||||| |||||    |||| |||||||| ||  |||||||||||||||||    
T  25581329 aggtaagggggagaatctttccactttagggtatctt-atctatgattggaggaacgtctttaattttaattatgttgttgttgttatgatg 25581419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 261
Target Start/End: Complemental strand, 14682 - 14588
Alignment:
Q  167 atcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatg 261  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||  |||||| ||||||||||    
T  14682 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

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Target: scaffold0290 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 180 - 276
Target Start/End: Original strand, 11842 - 11938
Alignment:
Q  180 ggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgatgaga 276  Q
    ||||||||||||||||||||||| || ||||||||||| |||||||| | |||||||||||||  |||||| ||||||||||| |||||||||||||    
T  11842 ggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatgaga 11938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 143216 - 143104
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgat 272  Q
    |||||| || |||||||| ||||||| ||||||||||| |||||||||| |||| ||||||||||||| |  |||||  |||||||||||||||||||||    
T  143216 gtaagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgat 143117  T
Q  273 gagagaatgatga 285  Q
    |||||| ||||||    
T  143116 gagagattgatga 143104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 285
Target Start/End: Complemental strand, 21496681 - 21496564
Alignment:
Q  167 atcgaggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaat 266  Q
    |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||||  |||||  |  |||||| |||||    
T  21496681 atcgaggtaagggggagaatctttgcactttagggtatcttaatctatg-tgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaat 21496583  T
Q  267 tttgatgagagaatgatga 285  Q
     || |||||||||||||||    
T  21496582 atttatgagagaatgatga 21496564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 51624697 - 51624868
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatag--agaagagggga 106  Q
    ||||||| |||||||| ||||||||||||  |||||||| |||||||| || ||||||| || ||||||||||||  || |||| ||  |||| || |||    
T  51624697 gaagaaagttataacatgtgattgacccaagtataaatataaacattaggagttagaagagtcacttttgctcaaggtgaaaaaaagaaagaaaagagga 51624796  T
Q  107 ggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaagg 178  Q
    | | |  || ||||||||||| |||||||  |||||||| ||||||||| ||||| | | |||||||||||||    
T  51624797 gcataggagaagaaaccctagttgcgacgagatcaagcc-aagctggaaatttcagaagaaatcgaggtaagg 51624868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 219
Target Start/End: Complemental strand, 17451509 - 17451472
Alignment:
Q  182 agaatctttgcactttagggtatcttaatttatgatgg 219  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  17451509 agaatctttgcactttagggtatcttaatatatgatgg 17451472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 285
Target Start/End: Complemental strand, 15098 - 14986
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgat 272  Q
    |||||| |||||||||||||||| |||||||||||||| ||||| | || ||||  |||||||||||| |  |||||  |||||||||||||||||| ||    
T  15098 gtaagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttat 14999  T
Q  273 gagagaatgatga 285  Q
    |||||||||||||    
T  14998 gagagaatgatga 14986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 285
Target Start/End: Original strand, 516 - 629
Alignment:
Q  173 gtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaa-ttttaatacattgttgttgttatgatgtgaattttga 271  Q
    |||||| |||||||||||||| | ||| |||||||||| ||||||| ||||||| ||||||| |||||| |  |||||  ||||||||| |||||||| |    
T  516 gtaagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttatgatatgaattttta 615  T
Q  272 tgagagaatgatga 285  Q
    ||||||||||||||    
T  616 tgagagaatgatga 629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 737 - 827
Alignment:
Q  171 aggtaaggaggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaa-tacattgttgttgttatgatg 261  Q
    |||||||| |||||| |||||||||||||||||||||||| |||||| |||||||| |||| |||||||| ||  |||||| ||||||||||    
T  737 aggtaagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatg 827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 16784 - 16604
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatggaaaatagagaagaggggagg 108  Q
    ||||||| |||||||| |||||||||| || |||||||||||||||||  | ||||||| || ||||||| | ||| || |||| ||| |  |    |||    
T  16784 gaagaaagttataacatgtgattgaccaacgtataaatagaaacattagaagttagaagagtcacttttgttgaacgtgaaaaa-agaaagaaaaaaagg 16686  T
Q  109 agaaaaggaga--aaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaaggaggagaatct 188  Q
    || | ||||||  |||||||| |||||||| |||||||| ||||||||| ||||| | | ||||||||||||| |||||||||    
T  16685 agcataggagagaaaccctagttgcgacgggatcaagcc-aagctggaaatttcagaagaaatcgaggtaagggggagaatct 16604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 31437 - 31256
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatg-gaaaatagag-aagagggga 106  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||||  | ||||||| || ||||||| | ||| ||  |||| | || || |  |||    
T  31437 gaagaaatttataacatgtgattgacccaagtataaatagaaacattagaagttagaagagtcacttttgttgaacgtgaaaaaagaaagaaaaaaagga 31338  T
Q  107 ggagaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaaggaggagaatct 188  Q
    ||| |  || ||||||||||| | |||||| |||||||| ||||||||| ||||| | | ||||||||||||| |||||||||    
T  31337 ggataggagaagaaaccctagttacgacgggatcaagcc-aagctggaaatttcagaagaaatcgaggtaagggggagaatct 31256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 188
Target Start/End: Complemental strand, 132970 - 132790
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttgctcaacatg-gaaaatagagaagaggggag 107  Q
    ||||||| |||||||| ||||||||||||  |||||||||||||||||  | ||||||  || ||||||| | ||| ||  |||| | |||| |  ||||    
T  132970 gaagaaagttataacatgtgattgacccaagtataaatagaaacattagaagttagaaaagtcacttttgttgaacgtgaaaaaagaaagaaaaaaggag 132871  T
Q  108 gagaaaaggagaaaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaaggaggagaatct 188  Q
     | |  || ||||||||||| || ||||| |||||||| ||||||||| ||||| | | ||||||||||||| |||||||||    
T  132870 cataggagaagaaaccctagttgtgacgggatcaagcc-aagctggaaatttcagaagaaatcgaggtaagggggagaatct 132790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 11517 - 11553
Alignment:
Q  180 ggagaatctttgcactttagggtatcttaatttatga 216  Q
    ||||||||||||||||||||||||||||||| |||||    
T  11517 ggagaatctttgcactttagggtatcttaatatatga 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 188
Target Start/End: Original strand, 26014 - 26085
Alignment:
Q  117 agaaaccctagctgcgacggaatcaagccaaagctggaattttca-agggaatcgaggtaaggaggagaatct 188  Q
    ||||||||||| |||||||| |||||||| ||||||||| ||||| | | ||||||||||||| |||||||||    
T  26014 agaaaccctagttgcgacgggatcaagcc-aagctggaaatttcagaagaaatcgaggtaagggggagaatct 26085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 25916 - 25985
Alignment:
Q  9 gaagaaaattataacaagtgattgacccacttataaatagaaacattatgaattagaagggttacttttg 78  Q
    ||||||| |||||||| || |||||||||  |||||||||||||||||  | ||||||| || |||||||    
T  25916 gaagaaagttataacatgttattgacccaagtataaatagaaacattagaagttagaagagtcacttttg 25985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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