View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0322_high_1 (Length: 474)
Name: NF0322_high_1
Description: NF0322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0322_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 431
Target Start/End: Complemental strand, 25062678 - 25062260
Alignment:
| Q |
13 |
tgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062678 |
tgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgca |
25062579 |
T |
|
| Q |
113 |
cctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062578 |
cctaaactataatgtttcaaatttgtttatccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaa |
25062479 |
T |
|
| Q |
213 |
cagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacctta |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25062478 |
tagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaactgaatttggagaagattcacctta |
25062379 |
T |
|
| Q |
313 |
tgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttgg |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25062378 |
tgatatagtttctcttgatgggaagacaactgttaattactccaacgtgcctttccctgaagatgtagactggccttgatatattgcgggcattatttgg |
25062279 |
T |
|
| Q |
413 |
tctcttattcgtgaatgat |
431 |
Q |
| |
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||||||||||||||||||| |
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| T |
25062278 |
tctcttattcgtgaatgat |
25062260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 398
Target Start/End: Complemental strand, 25071381 - 25070999
Alignment:
| Q |
13 |
tgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgca |
112 |
Q |
| |
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||||||||| || |||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||| |
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|
| T |
25071381 |
tgagatgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcatttgtatgca |
25071282 |
T |
|
| Q |
113 |
cctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaa |
212 |
Q |
| |
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|| |||||| ||| || ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25071281 |
ccaaaactaaaatattacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaa |
25071182 |
T |
|
| Q |
213 |
cagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacctta |
312 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
25071181 |
tagtaacaaaggagatattgaatgtcatcaaagaagcagagtgggaaccaagtctatattggaagttaatgccagctgaatttggagaagattcacctta |
25071082 |
T |
|
| Q |
313 |
tgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatattg |
398 |
Q |
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|||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
25071081 |
tgatatggttactcttgatgggaagacaa---ttaatttctccaatgtgcctttccctgaagatgtagattggccttgatatattg |
25070999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 397
Target Start/End: Complemental strand, 25084287 - 25083904
Alignment:
| Q |
13 |
tgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgca |
112 |
Q |
| |
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||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||| | |||| |
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|
| T |
25084287 |
tgagatgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcatttgtatgca |
25084188 |
T |
|
| Q |
113 |
cctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtgaaa |
212 |
Q |
| |
|
||||| ||| ||| |||||||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
25084187 |
cctaa-ctaaaatatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatggagttcatctatcaaacaaggggagtgaaa |
25084089 |
T |
|
| Q |
213 |
cagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacctta |
312 |
Q |
| |
|
||||||||| || ||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| ||||| |
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|
| T |
25084088 |
tagtaacaaaagagatattgaatgtcatcgaagaagcagagtggaaaccaagtctatattggaagttaatgccagctgaatttggagaagattctcctta |
25083989 |
T |
|
| Q |
313 |
tgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatatt |
397 |
Q |
| |
|
|||||| ||||||||||||||||||| || | |||||| |||| |||||||||| ||||| | |||||| ||||||||||||||| |
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|
| T |
25083988 |
tgatatggtttctcttgatgggaagataaatattaatttctccgatgtgccttttcctgatggtgtagagtggccttgatatatt |
25083904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 109 - 396
Target Start/End: Complemental strand, 25089973 - 25089683
Alignment:
| Q |
109 |
tgcacctaaactataatgtttcaaatttgtttctccgtaat---ttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgagggg |
205 |
Q |
| |
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||||||||| ||| ||||||| |||||||||| || |||| ||| || |||||||||||||||||||||||||||||| ||| |||||| ||||||| |
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| T |
25089973 |
tgcacctaatctaaaatgttttaaatttgtttatcaataataatttagtttggtggtttgattatttcttagtgatggagtacatttatcaactgagggg |
25089874 |
T |
|
| Q |
206 |
agtgaaacagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagatt |
305 |
Q |
| |
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||||||| |||||||||||| ||||||||||| || || |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |
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|
| T |
25089873 |
agtgaaatagtaacaaaggagatattgaatgtcataaagaaagcagagtgggaaccaagtctatattgtaagttaatgccagctgaatttggagaagata |
25089774 |
T |
|
| Q |
306 |
caccttatgatatagtttctcttgatgggaagacaactgttaattactccaatgtgcctttccctgaagatgtagactggccttgatatat |
396 |
Q |
| |
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||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||| ||| |||||| |||||||||||||| |
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|
| T |
25089773 |
caccttatgatatggtttctcttgacgggaagacaactgttaatttctccaatgtgccttttcctcaaggtgtagagtggccttgatatat |
25089683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 25058464 - 25058166
Alignment:
| Q |
17 |
atgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttattt--gcacc |
114 |
Q |
| |
|
|||||||| |||| ||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| || |||||| ||| | | || |
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|
| T |
25058464 |
atgaacatcaaggccattgatttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcatatatgtatgtccc |
25058365 |
T |
|
| Q |
115 |
taaacta-taa---tgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatggagttcatctatcaaatgaggggagtga |
210 |
Q |
| |
|
|| | || ||| | | ||||||||| | || | |||||||||| || |||| |||||| ||||||||||| ||||| | || |||||||||||| |
|
|
| T |
25058364 |
tatattaataaatatatatcaaatttgcatttcaatgatttaattagatgatttggttattttttagtgatggaattcatttctctgctgaggggagtga |
25058265 |
T |
|
| Q |
211 |
aacagtaacaaaggaaatattgaatgtaatcaaagaagcagagtgggaaccaagtctatattggaagctaatgccaattgaatttggagaagattcacc |
309 |
Q |
| |
|
|| || ||||||||||| | || || ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
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|
| T |
25058264 |
aatggtgtcaaaggaaataattaaggttatcaaagaagcagagtgggaaccaaatctatattggaagacaatgccagttgaatttggagaagattcacc |
25058166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 25090579 - 25090491
Alignment:
| Q |
13 |
tgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctc |
101 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
25090579 |
tgagatgaaaataaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctc |
25090491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 103
Target Start/End: Complemental strand, 25094759 - 25094670
Alignment:
| Q |
14 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
103 |
Q |
| |
|
|||||||| || |||| ||||||| ||||||||||||| || ||||| ||| | ||| || ||||||| |||| |||||| || |||||| |
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|
| T |
25094759 |
gagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataactggcgaaatgtttgcttcacgtaagtttgctctcat |
25094670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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