View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0322_high_9 (Length: 207)
Name: NF0322_high_9
Description: NF0322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0322_high_9 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 18342847 - 18342984
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342847 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
18342946 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
18342947 |
caccaatataagcataccgtcgattactagctcctatg |
18342984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 48288822 - 48288862
Alignment:
| Q |
37 |
atcacttcagatctttctaaagatgaatttggtactgcttt |
77 |
Q |
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||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48288822 |
atcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 36840620 - 36840757
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840620 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
36840719 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
36840720 |
caccaatataagcataccgtcgattactagctcctatg |
36840757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 164517 - 164380
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
164517 |
tttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgt |
164418 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatg |
138 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |
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| T |
164417 |
caccaatataagcataccgttgattactagctcctatg |
164380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14249209 - 14249346
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
14249209 |
tttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgt |
14249308 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatg |
138 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||| |
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| T |
14249309 |
caccaatataagcataccgttgattactagctcctatg |
14249346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 46699127 - 46699234
Alignment:
| Q |
31 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
130 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
131 |
ctcctatg |
138 |
Q |
| |
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|||||||| |
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|
| T |
46699227 |
ctcctatg |
46699234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 867 - 733
Alignment:
| Q |
4 |
agttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||| |
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| T |
867 |
agttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcac |
768 |
T |
|
| Q |
104 |
caatataagcataccgtcgattactagctcctatg |
138 |
Q |
| |
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|||||| |||||| || |||||||||||||||||| |
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|
| T |
767 |
caatatgagcatatcggcgattactagctcctatg |
733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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