View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0322_low_3 (Length: 425)
Name: NF0322_low_3
Description: NF0322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0322_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 46018169 - 46018510
Alignment:
| Q |
1 |
aaggctactttgtgagattgaggtagtcggccacatttctggttggcacggaaatggcaggtcaaagcttgtagaataagcactcaacaggcctgaagga |
100 |
Q |
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| T |
46018169 |
aaggccactttgtgagattgaggtagtcggccacatttctggttggcacggaaatggcaggtcaaagcttgtagaataagcactcaacaggcctgaagga |
46018268 |
T |
|
| Q |
101 |
tagaattaggatatcagcaacaaaaagtgaaaataaaaagttttgaaacatagttatataccctcttcaagactcatcgcctagacaactcaagactttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46018269 |
tagaattaggatatcagcaacaaaaagtgaaaataaaaagttttgaaacatagttatataccctcttcaagactcatcgcctagacaactcaagactttt |
46018368 |
T |
|
| Q |
201 |
tcagttttgaaatgcatccaaaagtgtttatgcagaatataagtgtacatatagagtaccttgctgagcaattggaaagtcaaacggttgccgggcttga |
300 |
Q |
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| T |
46018369 |
tcagttttgaaatgcatccaaaagtgtttatgcagaatataagtgtacatatagagtaccttgctgagcaattggaaagtcaaacggttgccgggcttga |
46018468 |
T |
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| Q |
301 |
tcttgaccaccatattgtgcagtttgtacacttgatgatgtc |
342 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
46018469 |
tcttgaccaccatattgtgcagtttgtacacttgatgatgtc |
46018510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 122 - 331
Target Start/End: Original strand, 46030914 - 46031132
Alignment:
| Q |
122 |
aaaaagtgaaaataaaaagttttgaaacatagtta-tataccctcttcaagactcatcgcctagac-aactcaagactttttcagttttgaaatgcatcc |
219 |
Q |
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||||| ||||||| | |||||| |||| |||||| |||||||||||||||||||| | |||| || |||| ||||||||||||||||||||||||||| |
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| T |
46030914 |
aaaaattgaaaattagtagtttttaaacgtagttaatataccctcttcaagactcaacacctataccaacttgagactttttcagttttgaaatgcatcc |
46031013 |
T |
|
| Q |
220 |
aaaagtgtttatgcagaatataagtgtaca-------tatagagtaccttgctgagcaattggaaagtcaaacggttgccgggcttgatcttgaccacca |
312 |
Q |
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| T |
46031014 |
aaaaggttttatgcagaatataagtgtatatataaattatagagtaccttgctgacaaactagaaagtcagactgttgcagggcttgatcttgaccgtca |
46031113 |
T |
|
| Q |
313 |
tattgtgcagtttgtacac |
331 |
Q |
| |
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||||||||| ||||||||| |
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| T |
46031114 |
tattgtgcattttgtacac |
46031132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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