View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0322_low_6 (Length: 276)

Name: NF0322_low_6
Description: NF0322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0322_low_6
NF0322_low_6
[»] chr2 (2 HSPs)
chr2 (50-243)||(30215099-30215292)
chr2 (50-237)||(29811378-29811565)
[»] chr5 (7 HSPs)
chr5 (50-237)||(25763331-25763518)
chr5 (50-237)||(20231436-20231623)
chr5 (50-237)||(34827483-34827669)
chr5 (91-237)||(23350344-23350490)
chr5 (91-237)||(16491088-16491234)
chr5 (50-232)||(13849044-13849204)
chr5 (108-218)||(31056776-31056886)
[»] chr7 (4 HSPs)
chr7 (50-237)||(19220245-19220432)
chr7 (50-237)||(41254129-41254316)
chr7 (91-237)||(15893598-15893743)
chr7 (91-150)||(23291971-23292030)
[»] chr1 (5 HSPs)
chr1 (50-237)||(45907693-45907880)
chr1 (91-236)||(33804941-33805086)
chr1 (91-237)||(44709983-44710129)
chr1 (102-237)||(50517995-50518130)
chr1 (91-220)||(12864678-12864806)
[»] chr8 (4 HSPs)
chr8 (50-237)||(9138456-9138643)
chr8 (50-237)||(23256364-23256542)
chr8 (91-237)||(757500-757646)
chr8 (91-237)||(14825292-14825438)
[»] chr3 (5 HSPs)
chr3 (91-237)||(52969337-52969483)
chr3 (54-237)||(6144863-6145045)
chr3 (91-237)||(13267948-13268093)
chr3 (91-237)||(26755378-26755524)
chr3 (178-237)||(48096305-48096364)
[»] chr6 (1 HSPs)
chr6 (91-237)||(10623374-10623520)
[»] scaffold0008 (1 HSPs)
scaffold0008 (109-211)||(259737-259839)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 30215292 - 30215099
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  30215292 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtataattcttcatcatcttct 30215193  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctctgtgct 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  30215192 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccagctgtctgcatcctctcggtgct 30215099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 29811565 - 29811378
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||| ||  ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29811565 atcatcattttcagccttcataccaggaccaggaccaacaggactaaccctctcatcgggatcaagattttcaataatgtacaattcttcatcatcttct 29811466  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  29811465 accaccgcttgacccgccgcccgacttaactcattataatctaccatccgactgacatatctatcaggccagctgtctgcatcctctc 29811378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 25763518 - 25763331
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25763518 atcatcattttcagccttcacaccaggaccaggaccaacaggaccaaccctctcatcgggatcaagattttcaataatgtacaattcttcatcatcttct 25763419  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  25763418 accaccgcttgacccgccgcccgacttagctcattataatctaccatccggctagcatatctatcaggccagctgtctgcatcctctc 25763331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 20231436 - 20231623
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||| ||||||||||||||| ||| |||| ||||||||||||    
T  20231436 atcatcattttcagccttcacaccaggaccaggaccaacaggaccaaccctctcatcaggattaagattttcaataatatactattcttcatcatcttct 20231535  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| ||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||  |||||||||||||||    
T  20231536 accaccgcttgacccgccacccgacttagctcattataatctaccatctgactgacatatctatcaggccagatgtctgcatcctctc 20231623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 34827483 - 34827669
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||   ||||||||||| || || |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  34827483 atcatcattttcagccttcacaccaagaccaggaccagcatgatcaaccctctcatcgggat-aagattttcaataatgtacaattcttcatcatcttct 34827581  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  34827582 accaccgcttgacccgtcgcccaacttaactcattataatctaccatccggctggcatatctatcaggccagctgtctgcatcctctc 34827669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 23350344 - 23350490
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||||||||||||||||||||||||||||||    
T  23350344 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcttcatcatcttctatcaccgcttgacccgccgcccgacttagctcattataatc 23350443  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    ||||||||||||| ||||||||||||||||  ||||| |||||||||    
T  23350444 taccatccggctggcatatctatcaggccagttgtcttcatcctctc 23350490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 16491088 - 16491234
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||| || || ||||||| ||   ||  ||||| ||||||||||||||||||||||||    
T  16491088 gaccaaccctctcatccggatcaagattttcaataacgtacaattcttcgtcttcttctatcacgtctacacccgtcgcccgacttagctcattataatc 16491187  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |  ||||||||||||||| |||||||||||  |||||||||||||||    
T  16491188 tgtcatccggctgacataactatcaggccatgtgtctgcatcctctc 16491234  T

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Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 50 - 232
Target Start/End: Original strand, 13849044 - 13849204
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||      ||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||    
T  13849044 atcatcattttcagccttcacac------caggaccaacaggaccaaccctctcatcaggatcaagatgttcaataatgtacaattcttcatcatcttct 13849137  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatc 232  Q
    ||||                | || |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  13849138 acca----------------ctgatttagctcattataatctaccattcggctgacatatctatcaggccagttgtctgcatc 13849204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 31056776 - 31056886
Alignment:
Q  108 ggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacat 207  Q
    |||| ||||||||||||||||||||| || |||||||||  || || | | ||||| |||||||||  ||| |||||||| || |||||||| |||| ||    
T  31056776 ggattaagattttcaataatgtacaaatcttcatcatctcttatcacctcataacctgccgcccgaggtagttcattatagtcaaccatccgtctgatat 31056875  T
Q  208 atctatcaggc 218  Q
    |||||||||||    
T  31056876 atctatcaggc 31056886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 144; Significance: 9e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 19220432 - 19220245
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  19220432 atcatcattttcagccttcacaccaggaccaggaccaacatgaccaaccctctcatcgggatcaagattttcaataatgtacaattcttcatcatctttt 19220333  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||| ||||||||||||||||    
T  19220332 accaccgcttgacccgccgcccgacttagctcattataatctaccatccgactagcatatctatcaggccagctgtctgcatcctctc 19220245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 41254129 - 41254316
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  41254129 atcatcattttcagccttcacaccaggaccaggaccaacaggaccaaccctctcatcgggatcaagattttcaataatgtataattcttcatcatcttct 41254228  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||  ||||| |||||||||    
T  41254229 accatcgcttgacccgccgctcgacttagctcattataatctaccatccggctggcgtatctatcaggccagttgtctccatcctctc 41254316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 15893743 - 15893598
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||| || | ||  ||||||||||||||||| ||||||||||||    
T  15893743 gaccaaccctctcatcgggatcaagattttcaatagtgtacaattcttcgtcatcttctatcacctctacacccgccgcccgacttaactcattataatc 15893644  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |  |||| |||||  |||||||||| ||||  |||||||||||||||    
T  15893643 tggcatctggctggaatatctatca-gccagatgtctgcatcctctc 15893598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 23291971 - 23292030
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttcta 150  Q
    ||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||    
T  23291971 gaccaaccctctcatcgggataaagattttcaataatgtacaatttttcatcatcttcta 23292030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 45907693 - 45907880
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||  ||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  45907693 atcatcattttcagccttcacaccaggatcaggacgaacaggaccaaccctctcatcgggatcaagattttcaacaatgtacaattcttcatcatcttct 45907792  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  45907793 accaccggttgaccccccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccagctgtctgcaccctctc 45907880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 33805086 - 33804941
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  33805086 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcttcatcatcttctaccaccgcttgacccgccgcccgacttagctcattataatc 33804987  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctct 236  Q
    |||||||||  || ||||||||| |||||| |||||||||||||||    
T  33804986 taccatccgaatggcatatctattaggccagctgtctgcatcctct 33804941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 44709983 - 44710129
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||    
T  44709983 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcttcatcatcttctacaaccgcttgacccgccgcccgacttagctcattataatc 44710082  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||||| ||| || ||||||||| |||||| ||||||||||||||||    
T  44710083 taccattcgggtggcatatctattaggccagctgtctgcatcctctc 44710129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 102 - 237
Target Start/End: Complemental strand, 50518130 - 50517995
Alignment:
Q  102 tcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatctaccatccggc 201  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  50518130 tcatcgggatcaagattttcaataatgtacaattcttcatcatcttctaccaccgcttgacccgccgcccgacttaactcattaaaatctaccatccggc 50518031  T
Q  202 tgacatatctatcaggccaactgtctgcatcctctc 237  Q
    || ||||||||| |||||| ||||||||||||||||    
T  50518030 tggcatatctattaggccagctgtctgcatcctctc 50517995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 12864678 - 12864806
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||| ||| ||||||||||||||||||||||||||||| ||| || |||||| ||| || | ||| | |||||||||||||||||||||||||||     
T  12864678 gaccaaccttcttatcgggatcaagattttcaataatgtaca-ttcttcgtcatctcctatcacctcttgatccgccgcccgacttagctcattataata 12864776  T
Q  191 taccatccggctgacatatctatcaggcca 220  Q
    | ||||| || ||||||||||| |||||||    
T  12864777 tgccatctggttgacatatctaacaggcca 12864806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 9138456 - 9138643
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    ||||| ||||||| ||||||||   ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  9138456 atcataattttcaaccttcacaacaggaccaggaccaacaggaccaaccctctcatcaggatcaagattttcaataatgtacaattcttcatcatcttct 9138555  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||||||||    
T  9138556 accaccgcttgacccgccgcccgacttagctcattataatctaccatccggctggcatatctatcaggtcagctggctgcatcctctc 9138643  T

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Target: chr8; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 23256542 - 23256364
Alignment:
Q  50 atcatcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttct 149  Q
    |||||||||||||||||||||||  ||||||||||||||         ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  23256542 atcatcattttcagccttcacaccaggaccaggaccaac---------cctctcatcgggatcaagattttcaataatgtacaattcttcatcatcttct 23256452  T
Q  150 accatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||| ||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  23256451 accaccgcttgactcgccgcccgacttagctcattataatctaccatccggctggcatatctatcaggccagctgtctgcatcctctc 23256364  T

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Target: chr8; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 757646 - 757500
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | ||| ||||||||| ||||||||||| ||||||||    
T  757646 gaccaaccctctcatcgggatcaagattttcaattatgtacaattcttcatcatcttctaccacctcttgacccgccgctcgacttagctcgttataatc 757547  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    ||||||||| ||| ||||| |||||||||| || | |||||||||||    
T  757546 taccatccgactggcatatttatcaggccagctttgtgcatcctctc 757500  T

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Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 14825438 - 14825292
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || |||||| ||| ||    || |||||||||||||||||||||||||||||     
T  14825438 gaccaaccctctcatcgggatcaagattttcaataatgtacaattattcgtcatctcctatcactttttgacccgccgcccgacttagctcattataata 14825339  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    | ||||||| ||| |||||||||||||||||||||||||||||||||    
T  14825338 tgccatccgtctggcatatctatcaggccaactgtctgcatcctctc 14825292  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 52969337 - 52969483
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  52969337 gaccaaccctctcgtcgggatcaagattttcaataatgtacaattcttcatcatcttctaccaccgcttgacccgccgcccgacttagctcattataatc 52969436  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    |||||||| |||| |||||||||||||||| ||||||||||||||||    
T  52969437 taccatccagctggcatatctatcaggccagctgtctgcatcctctc 52969483  T

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Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 6144863 - 6145045
Alignment:
Q  54 tcattttcagccttcacacatggaccaggaccaacacgaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctacca 153  Q
    ||||||||||  |||||||  |||| | |||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||    
T  6144863 tcattttcagaattcacaccaggactatgaccaacaggaccaaccctctcatcgggatcaagattttcaataatgtactattcttcatcatcttctatca 6144962  T
Q  154 tcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
     ||||| ||||  || ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||    
T  6144963 ccgcttgacccctcgtccgacttagctcattataatctaccatcc-gctggcatatctatcaggccagctgtctgcatcctctc 6145045  T

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Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 13268093 - 13267948
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |||||||  | |||||||||||||||||||    
T  13268093 gaccaactctctcatcgggatcaagattttcaataatgtactattcttcatcatcttctaccaccgcttgacccgcc-tctgacttagctcattataatc 13267995  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    ||||||||||||| |||||||||||| ||| |||||||| |||||||    
T  13267994 taccatccggctggcatatctatcagaccagctgtctgcttcctctc 13267948  T

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Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 26755378 - 26755524
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| || ||||  ||| |||||||||||||||| ||||||||     
T  26755378 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcttcgtcatcttctatcaccgctacaccggccgcccgacttagcttattataatt 26755477  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    | ||||||||||| |||||||||||||| |  |||||||||||||||    
T  26755478 tgccatccggctggcatatctatcaggctaggtgtctgcatcctctc 26755524  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 48096364 - 48096305
Alignment:
Q  178 gctcattataatctaccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    ||||||||||||||||||| |||||| ||||||||| ||| || ||||||||||||||||    
T  48096364 gctcattataatctaccattcggctggcatatctattaggtcagctgtctgcatcctctc 48096305  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 10623374 - 10623520
Alignment:
Q  91 gaccaaccctctcatcgggatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatc 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||  || |||||||||| || ||||  || |||||||||||||||||||||||||||    
T  10623374 gaccaaccctctcatcgggatcaagattttcaataatgtacaattattcgtcatcttctatcaccgctacactcgccgcccgacttagctcattataatc 10623473  T
Q  191 taccatccggctgacatatctatcaggccaactgtctgcatcctctc 237  Q
    | ||||||||||| |||||||||| |||||  |||||||||| ||||    
T  10623474 tgccatccggctggcatatctatctggccaggtgtctgcatcttctc 10623520  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 211
Target Start/End: Original strand, 259737 - 259839
Alignment:
Q  109 gatcaagattttcaataatgtacaattcatcatcatcttctaccatcgcttaacccgccgcccgacttagctcattataatctaccatccggctgacata 208  Q
    ||||||||||||||| ||||||||| || |  |||||| |||| | | |  |||| |||||||||| ||| |||||||| || |||||| | ||||||||    
T  259737 gatcaagattttcaacaatgtacaaatcttggtcatctcctactacctcacaacctgccgcccgacatagttcattatagtcaaccatctgactgacata 259836  T
Q  209 tct 211  Q
    |||    
T  259837 tct 259839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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