View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_high_6 (Length: 356)
Name: NF0323_high_6
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 90 - 356
Target Start/End: Original strand, 48185414 - 48185681
Alignment:
| Q |
90 |
aattaagctcttcctt-gcaagaacaaaacacacattttatttggagattcaaatttctaacttcttccacagattttccttaaaaaatgaagccttctt |
188 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48185414 |
aattaagctcttcctttgcaagaacaaaacacacattttatttggagattcaaatttctaacttcttccacagattttccttaaaaaatgaagccttctt |
48185513 |
T |
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| Q |
189 |
atgtagtagtttctcttctcattttgtcacttctccttacaaaaactcaaggtaaatatataaatataatttaacagcatgcacttcaaacaataattaa |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48185514 |
gtgtagtagtttctcttctcattttgtcacttctccttacaaaaactcaaggtaaatatataaatataatttaacagcatgcagttcaaacaataattaa |
48185613 |
T |
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| Q |
289 |
ctagtccttgttacatttctaatcttccttttttgtttgtgtgcaggaatacgtttgggaaaagggtc |
356 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
48185614 |
ctagtccttgttacatttctaatcttccttttctgtttgtgtgcaggaatacgtttgggaaaagggtc |
48185681 |
T |
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