View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0323_low_11 (Length: 364)
Name: NF0323_low_11
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 6e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 85 - 320
Target Start/End: Original strand, 15484838 - 15485072
Alignment:
| Q |
85 |
acatcatcgtacaaaaatatgttatgtaataaaacataacactctctcacactttccacactaacttatataactctttgtgcattttagacttacattt |
184 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
15484838 |
acatcatcctgcaaaacaatgttatgtaataaaacataacactctctcacactttccacactaacttacattactctttgtgcattttagacttacattt |
15484937 |
T |
|
| Q |
185 |
actgtcaaagttcatattgttccttatgatgcatatttacacacctactaaaatcttcaactttgtctatgtaccaaattgggtttctcacatagctaga |
284 |
Q |
| |
|
| | |||| |||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
15484938 |
attatcaatgttcat-ttgctccttatgatgcatatttacacacctactcaaagcttcaactttgtctatgtaccaaatcgggtttttcacatagctaga |
15485036 |
T |
|
| Q |
285 |
tctcagagggactaaaagcctctactagttcaccaa |
320 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15485037 |
tctcagagggactaaaagtctctactagttcaccaa |
15485072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 321 - 360
Target Start/End: Original strand, 29706669 - 29706708
Alignment:
| Q |
321 |
ctaagaactaaaagtaaactacttggacctacaactccta |
360 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
29706669 |
ctaagaactgaaagtaaactacttggacctacaactccta |
29706708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 2875695 - 2875747
Alignment:
| Q |
144 |
actaacttatataactctttgtgcattttagacttacatttactgtcaaagtt |
196 |
Q |
| |
|
|||||||||| | ||| ||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2875695 |
actaacttatgttactatttatgcattttagacttacatttactatcaaagtt |
2875747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University