View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_13 (Length: 353)
Name: NF0323_low_13
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 45232468 - 45232772
Alignment:
| Q |
1 |
catttgccaagttcttcttctccggccagcaatttcaactcatagttgaatatgctggcaattctattcctaggtgtagattgcacaaatgtgcctaatg |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45232468 |
catttgccaagttcttcttctccggccaacaatttcaactcatagttgcttatgctggcaattctattcctaggtgtagattgcacaaatgtgcctattg |
45232567 |
T |
|
| Q |
101 |
aagttgtcacctcctcagcaaggtaggttgaagatacctgtggcaaccccatttatattttaggtgtaggtttcttcaaaatttgcaaaaacaaatcgcc |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45232568 |
aagttgccacctcctcagcaaggtaggttgaagatacctgtggcaaccccatttatattttaggtgtaggtttcttcaaaattttcaaaaacaaatcgcc |
45232667 |
T |
|
| Q |
201 |
ttcttcaccatactcttaaaaaatccatgtagctcaacaccaaagcagctttgtaaatgaattgattcccttcaacagaaagaaagtagatggtactatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45232668 |
ttcttcaccatactcttaaaaaatccatgtagctcaacaccaaagcagctttgtaaatgaattgattcccttcaacagaaagaaagtagatggtactatt |
45232767 |
T |
|
| Q |
301 |
aatca |
305 |
Q |
| |
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||||| |
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| T |
45232768 |
aatca |
45232772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 243 - 305
Target Start/End: Original strand, 45239981 - 45240043
Alignment:
| Q |
243 |
aagcagctttgtaaatgaattgattcccttcaacagaaagaaagtagatggtactattaatca |
305 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
45239981 |
aagcagctttgtaaataaattgattcccttcaactgaaagaaagtagatgatactattaatca |
45240043 |
T |
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