View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0323_low_15 (Length: 327)
Name: NF0323_low_15
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_15 |
 | |
|
| [»] scaffold0713 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 14648778 - 14648652
Alignment:
| Q |
75 |
gtgagatgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
174 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14648778 |
gtgacatgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
14648679 |
T |
|
| Q |
175 |
tttcatttaattactattattttaatt |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14648678 |
tttcatttaattactattattttaatt |
14648652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 75 - 201
Target Start/End: Complemental strand, 14658568 - 14658442
Alignment:
| Q |
75 |
gtgagatgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
174 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14658568 |
gtgacatgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
14658469 |
T |
|
| Q |
175 |
tttcatttaattactattattttaatt |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
14658468 |
tttcatttaattactattattttaatt |
14658442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 196
Target Start/End: Original strand, 17654886 - 17654992
Alignment:
| Q |
85 |
agaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatctatttcatttaa |
184 |
Q |
| |
|
|||||| ||| ||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||| | || ||| ||||||||||| |
|
|
| T |
17654886 |
agaacagagaggaaagagtgatacgggaaagagaaagag-aaagggtgtgagggaaaaatctagtagcttccgtgtctggtttac----atttcatttaa |
17654980 |
T |
|
| Q |
185 |
ttactattattt |
196 |
Q |
| |
|
|||||||||||| |
|
|
| T |
17654981 |
ttactattattt |
17654992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0713 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0713
Description:
Target: scaffold0713; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 75 - 196
Target Start/End: Complemental strand, 3608 - 3487
Alignment:
| Q |
75 |
gtgagatgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
174 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3608 |
gtgacatgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
3509 |
T |
|
| Q |
175 |
tttcatttaattactattattt |
196 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3508 |
attcatttaattactattattt |
3487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 75 - 195
Target Start/End: Complemental strand, 27525739 - 27525619
Alignment:
| Q |
75 |
gtgagatgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
174 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27525739 |
gtgacatgaaagaacaaagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccatgttttgtgtacatcta |
27525640 |
T |
|
| Q |
175 |
tttcatttaattactattatt |
195 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
27525639 |
tttcatttaattactattatt |
27525619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 27199781 - 27199903
Alignment:
| Q |
75 |
gtgagatgaaagaacaaagacgaaagaggaatacgggaaagagaatgagcaaagggtgtgtgggaaaaatctagtagcttccatgttttgtctacatcta |
174 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27199781 |
gtgacatgaaagaacagagaggaaagaggaatacgggaaagagaatgagaaaagggtgtgtgggaaaaatctagtagcttccgtgttttgtctacatcta |
27199880 |
T |
|
| Q |
175 |
tttcatttaattactattatttt |
197 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
27199881 |
tttcatttaattactattttttt |
27199903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University