View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_16 (Length: 324)
Name: NF0323_low_16
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 14854280 - 14854371
Alignment:
| Q |
1 |
caccgcacttcactctctctcctcgccgtccccaacacctatctcaccaccgaccctcacctccataacctctccccctccgctctcgccga |
92 |
Q |
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| T |
14854280 |
caccgcacttcactctctctcctcgccgtccccaacacctatctcaccaccgaccctcacctccataacctctccccctccgccctcgccga |
14854371 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 160 - 227
Target Start/End: Original strand, 14854439 - 14854506
Alignment:
| Q |
160 |
ggtaaactcgtcaccactctcttccaaaccaccggccgcgccaccaacaacttcggctccgttaatat |
227 |
Q |
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| T |
14854439 |
ggtaaactcgtcaccactctcttccaaaccaccggccgcgccaccaacaacttcggctccgttaatat |
14854506 |
T |
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