View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_2 (Length: 444)
Name: NF0323_low_2
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 340
Target Start/End: Complemental strand, 47197808 - 47197482
Alignment:
| Q |
14 |
atatccacctttgattctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattaataatcaa |
113 |
Q |
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| T |
47197808 |
atatccacctttgattctgttttccaatataaacagttattacattatagttcaaaatatttacttagttaaaaatgttattacgaatattattaatcaa |
47197709 |
T |
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| Q |
114 |
atttaacttactttgatgtaaaccagttgacgaggtttgctatgaaaattcctatggtaatgttcagctgaaacataatgttaagtgctccacgtattct |
213 |
Q |
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| T |
47197708 |
atttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcctatggtaatattcagctgaaacataatgttaagtgctccacgaattct |
47197609 |
T |
|
| Q |
214 |
tgttggtgctatctcagatagaaacactggcacagcctgttttgtcacaattgcaattgatttagaatcagcaacattaaatttttaatgtgacaatgca |
313 |
Q |
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| T |
47197608 |
tgttggtgctatttcagatagaaaaactggcacagcctgttttgtcaaaattgcagttgatttagaatcagcaacattaaacttttaatgtgacaatgca |
47197509 |
T |
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| Q |
314 |
tgtctaattttctgatgaaaatatgga |
340 |
Q |
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| T |
47197508 |
tgtctaattttctgatgaaaatatgga |
47197482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 85 - 296
Target Start/End: Complemental strand, 47184858 - 47184647
Alignment:
| Q |
85 |
aaaatgttattacgaatattaataatcaaatttaacttactttgatgtaaaccagttgacgaggtttgctatgaaaattcctatggtaatgttcagctga |
184 |
Q |
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| T |
47184858 |
aaaatgttattatgaagattattaatcaaatttaacttactttgatgtaaaccagttgacaaggtttgctatgaaaattcctatggtaatgttcagctga |
47184759 |
T |
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| Q |
185 |
aacataatgttaagtgctccacgtattcttgttggtgctatctcagatagaaacactggcacagcctgttttgtcacaattgcaattgatttagaatcag |
284 |
Q |
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| T |
47184758 |
aacataatgttaagtgctccacgaattcttgttggtgctatttcagatagaaaaactggcacagcctgttttgtcaaaattgcaattagtcaagaatcag |
47184659 |
T |
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| Q |
285 |
caacattaaatt |
296 |
Q |
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|||| ||||||| |
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| T |
47184658 |
caactttaaatt |
47184647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 47197448 - 47197395
Alignment:
| Q |
364 |
aggacctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatg |
417 |
Q |
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| T |
47197448 |
aggacctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatg |
47197395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 750847 - 750897
Alignment:
| Q |
367 |
acctggttggcaaaaccaactccgcaaccaagtaagattctgccaaaaatg |
417 |
Q |
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||||| || ||||||||||| || |||||||||||||||||||||| |||| |
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| T |
750847 |
acctgattagcaaaaccaacaccacaaccaagtaagattctgccaacaatg |
750897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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