View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_21 (Length: 302)
Name: NF0323_low_21
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 281
Target Start/End: Original strand, 6944259 - 6944534
Alignment:
| Q |
6 |
agaagttgctgaaatcaagggttttcttgcttatgttgtgcagtgtcactataacaacttgaaaatttgggtaatggatcatcgaaatggatgggagaaa |
105 |
Q |
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| T |
6944259 |
agaagttgctgaaatcaagggttttcttgcttatgttgtgcagtgtcactataacaacttgaaaatttgggtaatggatcatcgaaatggatgggagaaa |
6944358 |
T |
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| Q |
106 |
aagtacaacattgtccctcctttgttcaattttcgtatgtgcggtctttggaagaatggggatcaactccttggaggaagggctggagaactgctcagat |
205 |
Q |
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| T |
6944359 |
aagtacaacattgtcccacctttgttcaattttcgaatgtgcggtctttggaagaacggggatcaactccttggaggaagggctggagaactgctcagat |
6944458 |
T |
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| Q |
206 |
catatgaccatcaaggcaactcactttgccaatttcaaattgatgttgattatgctaaatatttctggattcatga |
281 |
Q |
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| T |
6944459 |
catatgaccatcaaggcaactcactttgccaatttcaaattgatgttgattatgctaaatatttctggatccatga |
6944534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 258
Target Start/End: Complemental strand, 7474854 - 7474664
Alignment:
| Q |
65 |
tgaaaatttgggtaatggatcatcgaaatggatgggagaaaaagtacaacattgtccctcctttgttc-aat-tttcgtatgtgcggtctttggaagaat |
162 |
Q |
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| T |
7474854 |
tgaaaatttgggtaatggatcatag---tggatgggagaaaaagtacaacattagc--tcaattgtgccaatgtttcgtatgggcggtctttggaagaat |
7474760 |
T |
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| Q |
163 |
ggggatcaactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgccaatttcaaattgatgttgattat |
258 |
Q |
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| T |
7474759 |
ggtgatcaactccttggaggaaaggatggaaagtccctcgcatcatatgaccatgaaggcaactcactttgccaatttcaaattgatgttgattat |
7474664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 265
Target Start/End: Complemental strand, 7487723 - 7487531
Alignment:
| Q |
70 |
atttgggtaatggatcatcgaaatggatgggagaaaaagtacaacattgtccctcctttgttcaat-tttcgtatgtgcggtctttggaagaatggggat |
168 |
Q |
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| T |
7487723 |
atttgggtgatggatca---aagtggatggcacaaaaagtgcaacattggcccacttgtgt-caatgtttcgtatgtgtggcctttggaagaatggcgat |
7487628 |
T |
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| Q |
169 |
caactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgccaatttcaaattgatgttgattatgctaaat |
265 |
Q |
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| T |
7487627 |
caaatccttggaggaaaggttggagaaccactcacatcgtatgactatcaaggcaaatcactttaccaatttcaaattgatgttgattatactaaat |
7487531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 151 - 281
Target Start/End: Complemental strand, 7495120 - 7494990
Alignment:
| Q |
151 |
ctttggaagaatggggatcaactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgccaatttcaaattgatg |
250 |
Q |
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| T |
7495120 |
ctttggaagaatagcaatcaactccttggaggaaagtttggaaaaccgctcacatcatatgaccatcaaggcaactcactttgccaatttcaaattgatg |
7495021 |
T |
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| Q |
251 |
ttgattatgctaaatatttctggattcatga |
281 |
Q |
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| T |
7495020 |
ttgatgatactgaacatttttggattcatga |
7494990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 138 - 249
Target Start/End: Original strand, 7873695 - 7873806
Alignment:
| Q |
138 |
tcgtatgtgcggtctttggaagaatggggatcaactccttggaggaagggctggagaactgctcagatcatatgaccatcaaggcaactcactttgccaa |
237 |
Q |
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||||||| ||| |||||||||||||| ||| ||||||||||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
7873695 |
tcgtatgctcggcctttggaagaatggcgatgaactccttggaggaaagtttggagaaccgctcaaatcatatgaccatcaaggcaactcactttgccaa |
7873794 |
T |
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| Q |
238 |
tttcaaattgat |
249 |
Q |
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|||||||||||| |
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| T |
7873795 |
tttcaaattgat |
7873806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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