View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0323_low_22 (Length: 283)

Name: NF0323_low_22
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0323_low_22
NF0323_low_22
[»] chr3 (24 HSPs)
chr3 (77-262)||(50756581-50756766)
chr3 (77-157)||(45804628-45804708)
chr3 (77-155)||(1209213-1209291)
chr3 (179-252)||(50352357-50352430)
chr3 (179-262)||(12539995-12540078)
chr3 (103-159)||(12564023-12564079)
chr3 (182-262)||(15026339-15026419)
chr3 (101-159)||(12860536-12860594)
chr3 (144-229)||(50756783-50756868)
chr3 (103-159)||(17668927-17668983)
chr3 (182-262)||(21846747-21846823)
chr3 (103-159)||(16180705-16180762)
chr3 (144-229)||(3528660-3528746)
chr3 (77-118)||(11191276-11191317)
chr3 (103-159)||(11561752-11561809)
chr3 (207-247)||(12860575-12860615)
chr3 (182-262)||(25200792-25200872)
chr3 (207-262)||(16180743-16180798)
chr3 (182-249)||(17206626-17206693)
chr3 (207-249)||(17668904-17668946)
chr3 (212-262)||(48630161-48630211)
chr3 (181-262)||(3528630-3528711)
chr3 (77-118)||(11561846-11561887)
chr3 (77-118)||(16180623-16180664)
[»] chr1 (19 HSPs)
chr1 (78-262)||(39052070-39052254)
chr1 (77-159)||(22826047-22826129)
chr1 (182-262)||(6832903-6832983)
chr1 (179-262)||(21350677-21350760)
chr1 (103-159)||(24721181-24721237)
chr1 (103-157)||(45473808-45473862)
chr1 (103-159)||(44891180-44891237)
chr1 (187-262)||(12709694-12709769)
chr1 (182-249)||(17904474-17904541)
chr1 (182-249)||(18120259-18120326)
chr1 (182-249)||(28478044-28478111)
chr1 (207-262)||(44891144-44891199)
chr1 (207-249)||(24721218-24721260)
chr1 (85-157)||(51323111-51323182)
chr1 (187-262)||(12709359-12709434)
chr1 (84-150)||(44891382-44891447)
chr1 (173-262)||(12712932-12713021)
chr1 (77-118)||(28478005-28478046)
chr1 (207-247)||(45473785-45473825)
[»] chr6 (12 HSPs)
chr6 (77-157)||(19234105-19234185)
chr6 (179-262)||(29043983-29044066)
chr6 (77-156)||(25917418-25917497)
chr6 (182-262)||(22555748-22555828)
chr6 (144-260)||(35055999-35056117)
chr6 (182-261)||(31347056-31347135)
chr6 (140-229)||(31347081-31347171)
chr6 (100-156)||(30674634-30674690)
chr6 (103-159)||(18400919-18400975)
chr6 (144-229)||(10444841-10444927)
chr6 (181-262)||(35056066-35056147)
chr6 (181-261)||(10444877-10444957)
[»] chr5 (17 HSPs)
chr5 (77-157)||(16605573-16605653)
chr5 (77-157)||(22110515-22110595)
chr5 (179-262)||(26748749-26748831)
chr5 (186-262)||(16062337-16062412)
chr5 (101-159)||(8505063-8505121)
chr5 (103-155)||(12354810-12354862)
chr5 (182-249)||(6552024-6552091)
chr5 (187-262)||(21402197-21402272)
chr5 (103-159)||(14027208-14027261)
chr5 (207-249)||(14027242-14027284)
chr5 (110-159)||(8834520-8834569)
chr5 (181-262)||(30609891-30609972)
chr5 (183-249)||(26646255-26646322)
chr5 (127-157)||(12354132-12354162)
chr5 (207-249)||(12354783-12354825)
chr5 (77-118)||(8834431-8834472)
chr5 (182-262)||(21419635-21419715)
[»] chr4 (22 HSPs)
chr4 (179-262)||(55582007-55582090)
chr4 (103-159)||(16027432-16027488)
chr4 (103-159)||(19567294-19567350)
chr4 (182-249)||(46739766-46739833)
chr4 (144-229)||(13163811-13163897)
chr4 (103-159)||(12622020-12622076)
chr4 (181-262)||(9621287-9621368)
chr4 (186-249)||(35659256-35659319)
chr4 (182-249)||(45315532-45315599)
chr4 (103-159)||(46225751-46225807)
chr4 (182-261)||(13163847-13163926)
chr4 (144-229)||(10272074-10272160)
chr4 (144-229)||(10282796-10282882)
chr4 (207-249)||(12621997-12622039)
chr4 (103-148)||(14629023-14629069)
chr4 (207-249)||(16027469-16027511)
chr4 (207-249)||(46225788-46225830)
chr4 (103-159)||(44024896-44024953)
chr4 (181-261)||(10282832-10282912)
chr4 (182-249)||(26444479-26444546)
chr4 (200-261)||(10272110-10272171)
chr4 (127-155)||(26922982-26923010)
[»] chr2 (14 HSPs)
chr2 (179-262)||(36733133-36733216)
chr2 (179-262)||(22685443-22685526)
chr2 (181-262)||(45679152-45679233)
chr2 (179-262)||(36737286-36737369)
chr2 (179-242)||(25587989-25588052)
chr2 (201-252)||(44761835-44761886)
chr2 (103-159)||(10744620-10744677)
chr2 (182-249)||(1385234-1385301)
chr2 (144-229)||(28346511-28346594)
chr2 (187-262)||(14180828-14180903)
chr2 (77-111)||(10744538-10744572)
chr2 (185-227)||(21317133-21317175)
chr2 (77-118)||(25140074-25140115)
chr2 (200-261)||(28346500-28346561)
[»] chr7 (32 HSPs)
chr7 (77-261)||(9255718-9255903)
chr7 (77-261)||(9314347-9314532)
chr7 (77-155)||(24271078-24271156)
chr7 (84-155)||(15105359-15105430)
chr7 (173-262)||(11314459-11314548)
chr7 (101-159)||(15577317-15577375)
chr7 (145-222)||(37538021-37538098)
chr7 (81-222)||(25941016-25941158)
chr7 (182-249)||(4692020-4692087)
chr7 (211-262)||(9255785-9255836)
chr7 (211-262)||(9314414-9314465)
chr7 (182-249)||(48217934-48218001)
chr7 (182-249)||(9744565-9744633)
chr7 (103-155)||(20254006-20254058)
chr7 (187-262)||(11314405-11314480)
chr7 (207-249)||(15577356-15577398)
chr7 (181-255)||(36301913-36301987)
chr7 (77-118)||(4691981-4692022)
chr7 (88-157)||(8136306-8136374)
chr7 (103-159)||(13134316-13134373)
chr7 (77-118)||(14154308-14154349)
chr7 (84-157)||(15138856-15138928)
chr7 (84-157)||(22001459-22001531)
chr7 (77-118)||(43747223-43747264)
chr7 (140-187)||(36301939-36301987)
chr7 (182-261)||(25941044-25941123)
chr7 (182-249)||(43747158-43747225)
chr7 (144-229)||(38294092-38294178)
chr7 (182-242)||(14154347-14154407)
chr7 (182-262)||(18985606-18985686)
chr7 (182-262)||(19000234-19000314)
chr7 (144-191)||(36302031-36302079)
[»] scaffold0004 (3 HSPs)
scaffold0004 (179-262)||(64790-64873)
scaffold0004 (179-262)||(74240-74323)
scaffold0004 (179-253)||(67489-67564)
[»] scaffold0059 (1 HSPs)
scaffold0059 (77-155)||(48837-48915)
[»] chr8 (34 HSPs)
chr8 (179-253)||(5079698-5079772)
chr8 (182-263)||(22343748-22343829)
chr8 (182-263)||(22355408-22355489)
chr8 (103-159)||(2718128-2718184)
chr8 (103-159)||(6574404-6574460)
chr8 (103-159)||(36733932-36733988)
chr8 (77-219)||(22482528-22482671)
chr8 (146-229)||(23882603-23882686)
chr8 (144-229)||(23885292-23885377)
chr8 (182-262)||(20518401-20518481)
chr8 (103-159)||(22473064-22473120)
chr8 (211-262)||(22482553-22482604)
chr8 (182-249)||(38988044-38988111)
chr8 (182-249)||(39019141-39019208)
chr8 (103-159)||(12800228-12800285)
chr8 (207-249)||(6574441-6574483)
chr8 (103-157)||(38050146-38050200)
chr8 (114-159)||(36406687-36406732)
chr8 (207-262)||(12800192-12800247)
chr8 (182-249)||(18820535-18820602)
chr8 (182-245)||(21513007-21513070)
chr8 (207-246)||(36733969-36734008)
chr8 (207-249)||(2718165-2718207)
chr8 (77-111)||(12800333-12800367)
chr8 (182-248)||(17979785-17979851)
chr8 (207-249)||(22473041-22473083)
chr8 (207-249)||(36406713-36406755)
chr8 (77-111)||(36729100-36729134)
chr8 (207-253)||(36729220-36729266)
chr8 (103-159)||(31724380-31724437)
chr8 (77-118)||(38988109-38988150)
chr8 (77-118)||(39019206-39019247)
chr8 (182-262)||(22310721-22310801)
chr8 (221-261)||(22480413-22480453)
[»] scaffold0230 (1 HSPs)
scaffold0230 (179-248)||(8129-8198)
[»] scaffold0174 (3 HSPs)
scaffold0174 (183-262)||(14759-14838)
scaffold0174 (179-262)||(3661-3744)
scaffold0174 (179-262)||(9783-9866)
[»] scaffold0108 (1 HSPs)
scaffold0108 (182-253)||(8338-8409)
[»] scaffold0112 (1 HSPs)
scaffold0112 (78-156)||(1541-1619)
[»] scaffold0100 (2 HSPs)
scaffold0100 (77-155)||(10429-10507)
scaffold0100 (77-154)||(27892-27969)
[»] scaffold0379 (2 HSPs)
scaffold0379 (179-262)||(9258-9342)
scaffold0379 (179-262)||(16450-16534)
[»] scaffold0285 (1 HSPs)
scaffold0285 (77-157)||(18508-18588)
[»] scaffold0231 (1 HSPs)
scaffold0231 (182-262)||(19238-19318)
[»] scaffold0056 (1 HSPs)
scaffold0056 (179-249)||(15128-15198)
[»] scaffold1256 (1 HSPs)
scaffold1256 (182-249)||(798-865)
[»] scaffold0125 (1 HSPs)
scaffold0125 (187-262)||(24309-24383)
[»] scaffold0213 (2 HSPs)
scaffold0213 (103-159)||(17808-17864)
scaffold0213 (207-249)||(17785-17827)
[»] scaffold0011 (1 HSPs)
scaffold0011 (182-247)||(39387-39452)
[»] scaffold0017 (1 HSPs)
scaffold0017 (103-159)||(25226-25282)
[»] scaffold0628 (1 HSPs)
scaffold0628 (182-249)||(4965-5032)
[»] scaffold0453 (1 HSPs)
scaffold0453 (182-249)||(6105-6172)
[»] scaffold0063 (2 HSPs)
scaffold0063 (182-249)||(61333-61400)
scaffold0063 (127-157)||(72853-72883)
[»] scaffold0439 (1 HSPs)
scaffold0439 (103-159)||(3089-3145)
[»] scaffold0123 (2 HSPs)
scaffold0123 (182-249)||(15583-15650)
scaffold0123 (77-118)||(15648-15689)
[»] scaffold0520 (1 HSPs)
scaffold0520 (77-155)||(646-723)
[»] scaffold0121 (2 HSPs)
scaffold0121 (103-159)||(18929-18985)
scaffold0121 (207-249)||(18906-18948)
[»] scaffold0005 (1 HSPs)
scaffold0005 (103-148)||(188314-188360)
[»] scaffold1716 (2 HSPs)
scaffold1716 (173-254)||(1320-1401)
scaffold1716 (217-262)||(1380-1425)
[»] scaffold0859 (1 HSPs)
scaffold0859 (88-157)||(3458-3526)
[»] scaffold0645 (2 HSPs)
scaffold0645 (103-159)||(886-943)
scaffold0645 (77-118)||(808-849)
[»] scaffold0505 (2 HSPs)
scaffold0505 (103-159)||(3507-3563)
scaffold0505 (207-249)||(3484-3526)
[»] scaffold0394 (1 HSPs)
scaffold0394 (182-262)||(8519-8599)
[»] scaffold1212 (1 HSPs)
scaffold1212 (127-157)||(203-233)
[»] scaffold0217 (1 HSPs)
scaffold0217 (103-157)||(27560-27614)
[»] scaffold0205 (1 HSPs)
scaffold0205 (212-262)||(6849-6899)
[»] scaffold0742 (1 HSPs)
scaffold0742 (77-118)||(2747-2788)
[»] scaffold0371 (1 HSPs)
scaffold0371 (128-157)||(14326-14355)


Alignment Details
Target: chr3 (Bit Score: 166; Significance: 7e-89; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 77 - 262
Target Start/End: Original strand, 50756581 - 50756766
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctctacttgactcatttttta 176  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50756581 aaataattaatgagttgttcttgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaattctctacttgactcattgttta 50756680  T
Q  177 ttactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50756681 ttactattgttgatgatgatttgttgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 50756766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 45804628 - 45804708
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  45804628 aaataattaatgagttgttattgagaaattatgtgtagcattaacattgtttaattgttgttgtttatgttgttaaattct 45804708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 1209213 - 1209291
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1209213 aaataattaatgagttcttattgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaatt 1209291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 50352357 - 50352430
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtatt 252  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  50352357 actattgttgatgatgatctgctgttgttttatgtggataaattctcttatctaaattattgtttattagtatt 50352430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 12540078 - 12539995
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  12540078 actattgttgatgatgatttgttgttgttttatgttgatatattctcttatctaaattattgtttattagtattgctaatgatg 12539995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 12564079 - 12564023
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  12564079 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 12564023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 15026339 - 15026419
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||| ||  |||||||| ||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  15026339 attgttgatgatgatttgtcgttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatg 15026419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 12860536 - 12860594
Alignment:
Q  101 gaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  12860536 gaaattatgtgaagcattaacattgttaaattgttgttgtttatgttgataaattctct 12860594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 50756783 - 50756868
Alignment:
Q  144 tgttgttaaattctctacttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||||||||||||||| ||||| | ||| ||||||||| |  || |||||||| |||||| |||||||| ||||    
T  50756783 tgttgttaaattctctacttgactcattatttatcagtatcgttgatgataaattgttgttgtttcatgttgttaaattcttttat 50756868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 17668983 - 17668927
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||    
T  17668983 aattatgtgaaacattaacattgtttaattgttattgtttatgttgataaattctct 17668927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 21846747 - 21846823
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||| |||||||||||| ||||||||||||||    | || |||||||||||||||| ||||| ||||||    
T  21846747 attgttgatgatgatttgctgttgttttgtgttgataaattct----tttacattattgtttattagtgttgttaatgatg 21846823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 16180705 - 16180762
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  16180705 aattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttctct 16180762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 3528660 - 3528746
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||| |||||||  || || | |||| ||||| |||||||| ||||    
T  3528660 tgttgttaaattctcttacttgactcattatttattagtattgttaatgatgaattgatgctattttgtgttgttaaattcttttat 3528746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 11191317 - 11191276
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  11191317 aaataattaatgagttgttattgagaaattatgtgaaccatt 11191276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 11561809 - 11561752
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  11561809 aattatgtgaaacattaacattgtttaattgattgttgtttatgttgataagttctct 11561752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 12860575 - 12860615
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttatta 247  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  12860575 tttatgttgataaattctcttacttaaattattgtttatta 12860615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 25200872 - 25200792
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||| ||||  ||| |||||||   |||| |||||||||| |  ||||||||||||||||||||||||| ||||||    
T  25200872 attgttgataatgaattgccgttgtttcgagttgttaaattctctcacataaattattgtttattagtattgttaatgatg 25200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 16180743 - 16180798
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||| ||||||||  ||||||| ||||||||||||||| | ||||||    
T  16180743 tttatgttgataagttctcttacttaaattactgtttattagtattgctaatgatg 16180798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 17206693 - 17206626
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||||||| |||| || || |||| | |||||||||||||||| |  |||||||||||||||||||    
T  17206693 attgttgatgttgatttgttgctgttctgtgttgataaattctctcacttaaattattgtttattagt 17206626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 17668946 - 17668904
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||| ||||||||||||||    
T  17668946 tttatgttgataaattctcttacttaaactattgtttattagt 17668904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 48630211 - 48630161
Alignment:
Q  212 gttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||| |||||||||| |  ||||||||||||||||||||||||| ||||||    
T  48630211 gttgttaaattctctcacataaattattgtttattagtattgttaatgatg 48630161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Original strand, 3528630 - 3528711
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||| ||||||  | |||||||||| ||||| ||||||||||||  | | | ||| ||||||||||||||| ||||||    
T  3528630 tattgttgttgatgaattactgttgttttgtgttgttaaattctcttacttgactcattatttattagtattgttaatgatg 3528711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 11561887 - 11561846
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    |||||||||||||| |||| ||||||||||||||||| ||||    
T  11561887 aaataattaatgagatgttattgagaaattatgtgaaccatt 11561846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 16180623 - 16180664
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    |||||||||||||| |||| ||||||||||||||||| ||||    
T  16180623 aaataattaatgagatgttattgagaaattatgtgaaccatt 16180664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 153; Significance: 4e-81; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 78 - 262
Target Start/End: Complemental strand, 39052254 - 39052070
Alignment:
Q  78 aataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctctacttgactcattttttat 177  Q
    ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39052254 aataactaatgaattgtttttgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaattctctacttgactcattgtttat 39052155  T
Q  178 tactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39052154 tactattgttgatgatgattttctgctgttatatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 39052070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 159
Target Start/End: Original strand, 22826047 - 22826129
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22826047 aaatgattaatgagttgttattgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaattctct 22826129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 6832983 - 6832903
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  6832983 attgttgatgatgatttgctgttgttttatgttgataaatcctcttatctaaattattgtttattagtattgctaatgatg 6832903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 21350677 - 21350760
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | ||||||    
T  21350677 actattgttgatgatgatttgctgttgttttatgttgataaatcctcttatctaaattattgtttattaatattgctaatgatg 21350760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 24721181 - 24721237
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  24721181 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 24721237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 45473862 - 45473808
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  45473862 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattct 45473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 44891237 - 44891180
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||    
T  44891237 aattatgtgaagcattaacattgtttaattgattgttgtttatgttgataaattctct 44891180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 12709769 - 12709694
Alignment:
Q  187 tgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||| ||| |||||||| ||||| | |||||| |||  |||||| |||||||||||||||||| ||||||    
T  12709769 tgatgatgatttgcagttgttttgtgttggtgaattctgttacttaaattcttgtttattagtattgttaatgatg 12709694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 17904474 - 17904541
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || || |||| | |||||||||||||||| |  |||||||||||||||||||    
T  17904474 attgttgatgatgatttgttgatgttctgtgttgataaattctctaacttaaattattgtttattagt 17904541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 18120326 - 18120259
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || |||||  || |||||||||||||||| |  |||||||||||||||||||    
T  18120326 attgttgatgatgatttgttgttgcattgtgttgataaattctctaacttaaattattgtttattagt 18120259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 28478044 - 28478111
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || |||||  || |||||||||||||||| |  |||||||||||||||||||    
T  28478044 attgttgatgatgatttgttgttgcattgtgttgataaattctctaacttaaattattgtttattagt 28478111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 44891199 - 44891144
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||| | ||||||    
T  44891199 tttatgttgataaattctcttacttaaattactgtttattagtattgctaatgatg 44891144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 24721218 - 24721260
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  24721218 tttatgttgataaattctcttacttaaattattgtttattagt 24721260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 157
Target Start/End: Complemental strand, 51323182 - 51323111
Alignment:
Q  85 aatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    |||||||||||  |||  || ||||||||| ||||| ||| || |||||||||||||||||||||||||||||    
T  51323182 aatgagttgttagtgaagaactatgtgaagtattaatgttatt-aattgttgttgtttatgttgttaaattct 51323111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 12709434 - 12709359
Alignment:
Q  187 tgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||| ||| |||||||| || || | |||| | |||  ||||||||||||||||||||||||| ||||||    
T  12709434 tgatgatgatttgccgttgttttgtgctggtgaattatgttacttaaattattgtttattagtattgttaatgatg 12709359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Complemental strand, 44891447 - 44891382
Alignment:
Q  84 taatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgtt 150  Q
    ||||||||||||  ||||||| |||||||||||| ||  || ||| |||||||||||||||||||||    
T  44891447 taatgagttgttaatgagaaactatgtgaagcatcaatattattt-attgttgttgtttatgttgtt 44891382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 12713021 - 12712932
Alignment:
Q  173 tttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||| ||||||| |||||||  || || | |||||||||| | |||||||| || |   ||||||||||||||||||||| ||||||    
T  12713021 tttattagtattgttaatgatgaattgatgctattttatgttgttgaattctctcatatgggttattgtttattagtattgttaatgatg 12712932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 28478005 - 28478046
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    |||||||||| |||||||| ||||||||||||||||| ||||    
T  28478005 aaataattaacgagttgttattgagaaattatgtgaatcatt 28478046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 45473825 - 45473785
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttatta 247  Q
    |||||||||||||||||| |||  |||||||||||||||||    
T  45473825 tttatgttgataaattcttttacttaaattattgtttatta 45473785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 19234185 - 19234105
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  19234185 aaataattaatgagttgttattgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaattct 19234105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 29044066 - 29043983
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  29044066 actattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 29043983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 25917497 - 25917418
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattc 156  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  25917497 aaataattaatgaattgttattgagaaattatgtgaagcatgaacattgtttaattgttgttgtttatgttgttaaattc 25917418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 22555828 - 22555748
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| | ||||||    
T  22555828 attgttgatgatgatttgctgttgttttatgttgataaatcctcttatctaaattattgtttattagaattgctaatgatg 22555748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 35056117 - 35055999
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctctta-tctaaattattgt 241  Q
    |||||||||||||||| |||||||||||| ||||||| |||||||||||||||  | |||||||||| | ||| |||||||||||| |   | | |||||    
T  35056117 tgttgttaaattctcttacttgactcattgtttattagtattgttgatgatgaattactgttgttttgtattgttaaattctcttacttggactcattgt 35056018  T
Q  242 ttattagtattgttgatga 260  Q
    |||||||||||||||||||    
T  35056017 ttattagtattgttgatga 35055999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 31347056 - 31347135
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||||||||||||  || ||||||||||||||| ||||||||||||  ||| | |||||||||||||||||||||||||    
T  31347056 attgttgatgatgaattgatgttgttttatgttgttaaattctcttacttaactcattgtttattagtattgttgatgat 31347135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 140 - 229
Target Start/End: Original strand, 31347081 - 31347171
Alignment:
Q  140 tttatgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |  || ||||||||||||||| |||||||| ||||    
T  31347081 tttatgttgttaaattctcttacttaactcattgtttattagtattgttgatgataaattgttgttgttttatgttgttaaattcttttat 31347171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 30674634 - 30674690
Alignment:
Q  100 agaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattc 156  Q
    ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  30674634 agaaactatatgaagcattaacattgtttaattgttgttgtttatgttgttaaattc 30674690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 18400975 - 18400919
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  18400975 aattatgtgaaacattaacattgtttaattgttgttatttatgttggtaaattctct 18400919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 10444927 - 10444841
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||| |||||||||||| ||||| | ||||||||||||| |  || |||||||| |||||| |||||||| ||||    
T  10444927 tgttgttaaattctcttacttgactcattgtttatcagtattgttgatgataaattgttgttgtttcatgttgttaaattcttttat 10444841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 35056147 - 35056066
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||  |  ||||| ||| ||||| ||||||||||||  | | | ||||||||||||||||||||||||||    
T  35056147 tattgttgatgatgaattattgttgctttgtgttgttaaattctcttacttgactcattgtttattagtattgttgatgatg 35056066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 10444957 - 10444877
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    |||||||||||||||  | || ||||||| ||||| ||||||||||||  | | | ||||||||| |||||||||||||||    
T  10444957 tattgttgatgatgaattactattgttttgtgttgttaaattctcttacttgactcattgtttatcagtattgttgatgat 10444877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 16605573 - 16605653
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16605573 aaataattaatgagttgttattgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaattct 16605653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 22110595 - 22110515
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22110595 aaataattaatgagttgttattgagaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgttaaattct 22110515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 26748831 - 26748749
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| |||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| | ||||||    
T  26748831 actattgttgatgatgatttgctgtggttttatgt-gataaattcacttatctaaattattgtttattagtattgctaatgatg 26748749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 262
Target Start/End: Complemental strand, 16062412 - 16062337
Alignment:
Q  186 ttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  16062412 ttgatgatgatttgttgttgttttatgttgataaat-ctcttatctaaattattgtttattagtattgctaatgatg 16062337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 8505063 - 8505121
Alignment:
Q  101 gaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  8505063 gaaactatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 8505121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 155
Target Start/End: Complemental strand, 12354862 - 12354810
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| ||||||    
T  12354862 aattatgtgaaacattaacattgtttaattgttgttgtttatgttgataaatt 12354810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 6552024 - 6552091
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || ||||||| | |||||||||||||||| |  |||||||||||||||||||    
T  6552024 attgttgatgatgatttgttgttgttctgtgttgataaattctctcacttaaattattgtttattagt 6552091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 21402197 - 21402272
Alignment:
Q  187 tgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||| |||||||||||| ||||| | ||||||||||  | ||||||||||||||||||||| | ||||||    
T  21402197 tgatgatgatttgctgttgttttgtgttggtgaattctcttacttgaattattgtttattagtattgctaatgatg 21402272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 14027208 - 14027261
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| ||||||||   ||||||||||||||| ||||||||||    
T  14027208 aattatgtgaagcattaacattgtttaa---ttgttgtttatgttgataaattctct 14027261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 14027242 - 14027284
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  14027242 tttatgttgataaattctcttacttaaattattgtttattagt 14027284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 8834520 - 8834569
Alignment:
Q  110 tgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||||||| || ||||||||||||||||||||||  ||||||||||    
T  8834520 tgaagcattaacattatttaattgttgttgtttatgtttataaattctct 8834569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 30609972 - 30609891
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||| |||||||  || ||||||||||||||| |||||||||| |  | ||||||||||||||| ||| ||| ||||||    
T  30609972 tattgttaatgatgaattgatgttgttttatgttgttaaattctctcacatgaattattgtttattaatatcgttaatgatg 30609891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 26646322 - 26646255
Alignment:
Q  183 ttgttgatga-tgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||||||| |||| |||||||||| | |||||||||||||||||   ||| |||||||||||||||    
T  26646322 ttgttgatgactgatttgctgttgttctgtgttgataaattctcttgcttaagttattgtttattagt 26646255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 12354162 - 12354132
Alignment:
Q  127 ttaattgttgttgtttatgttgttaaattct 157  Q
    |||||||||||||||||||||||||||||||    
T  12354162 ttaattgttgttgtttatgttgttaaattct 12354132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 12354825 - 12354783
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||||||||||||| |||||  |||||||||||||||||||    
T  12354825 tttatgttgataaattttcttacttaaattattgtttattagt 12354783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 8834431 - 8834472
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||  ||||||||||||||||    
T  8834431 aaataattaatgagttgttattgatgaattatgtgaagcatt 8834472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Complemental strand, 21419715 - 21419635
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||| |||||||  |||||||||||| ||||| |||| ||| |||  | |||||||| ||||||| |||||| ||||||    
T  21419715 attgttaatgatgaattgctgttgttttgtgttgttaaaatcttttacatgaattattgcttattagcattgttaatgatg 21419635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 55582090 - 55582007
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  55582090 actattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 55582007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 16027432 - 16027488
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  16027432 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 16027488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 19567294 - 19567350
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  19567294 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 19567350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 46739833 - 46739766
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||  |||||||||||||||||||    
T  46739833 attgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttattagt 46739766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 13163897 - 13163811
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||||| |  || ||||||||||||||| |||||||| ||||    
T  13163897 tgttgttaaattctcttacttgactcattgtttattagtattgttgatgataaattgttgttgttttatgttgttaaattcttttat 13163811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 12622076 - 12622020
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  12622076 aattatgtaaagcattaacattgtttaattgttgttgtttatgttgataaattctct 12622020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 9621368 - 9621287
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||  | |||||||||| ||||| |||||||||  |  ||||||||||||||||||||||||| ||||||    
T  9621368 tattgttgatgatgaattactgttgttttgtgttgttaaattctcccacataaattattgtttattagtattgttaatgatg 9621287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 35659319 - 35659256
Alignment:
Q  186 ttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||| || ||||| | ||||||||||||||||||||  |||||||||||||||||||    
T  35659319 ttgatgatgatttgttgttgctctatgttgataaattctcttacttaaattattgtttattagt 35659256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 45315532 - 45315599
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||||||||||||||| |||||| || |||||||||||| |||||  |||||||||||| ||||||    
T  45315532 attgttgatgatgatatgttgttgtattgtgttgataaattttcttacttaaattattgttaattagt 45315599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 46225751 - 46225807
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||||||| || ||  |||||||||||||||||||||||||| ||||||||||    
T  46225751 aattatgtgaagtatcaatattgtttaattgttgttgtttatgttgataaattctct 46225807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 13163926 - 13163847
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||||||||||||  || || |||||| ||||| ||||||||||||  | | | |||||||||||||||||||||||||    
T  13163926 attgttgatgatgaattgatgctgttttgtgttgttaaattctcttacttgactcattgtttattagtattgttgatgat 13163847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 10272160 - 10272074
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |  |  |||||||| |||||| |||||||| ||||    
T  10272160 tgttgttaaattctcttactttactcattatttattagtattgttgatgataaatttttgttgtttcatgttgttaaattcttttat 10272074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 10282882 - 10282796
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||| |||| ||||||| ||||||| ||||||||||||| |  |  |||||||| |||||| |||||||| ||||    
T  10282882 tgttgttaaattctcttactttactcattatttattagtattgttgatgataaatttttgttgtttcatgttgttaaattcttttat 10282796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 12622039 - 12621997
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  12622039 tttatgttgataaattctcttacttaaattattgtttattagt 12621997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 14629069 - 14629023
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttg 148  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  14629069 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 14629023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 16027469 - 16027511
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  16027469 tttatgttgataaattctcttacttaaattattgtttattagt 16027511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 46225788 - 46225830
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  46225788 tttatgttgataaattctcttacttaaattattgtttattagt 46225830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 44024896 - 44024953
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    |||||||||||||||||||  |||||||||| ||||||||||||||| ||| ||||||    
T  44024896 aattatgtgaagcattaacactgtttaattgattgttgtttatgttgataagttctct 44024953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 261
Target Start/End: Complemental strand, 10282912 - 10282832
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||| |||||||||  | |||||||||| ||||| ||||||||||||  | | | ||| |||||||||||||||||||||    
T  10282912 tattgctgatgatgaattactgttgttttgtgttgttaaattctcttactttactcattatttattagtattgttgatgat 10282832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 26444546 - 26444479
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || ||||||| | |||||||||||| ||||   ||||| |||||||||||||    
T  26444546 attgttgatgatgatttgttgttgttctgtgttgataaattatcttgcttaaatcattgtttattagt 26444479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 10272171 - 10272110
Alignment:
Q  200 ctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    |||||||||| ||||| ||||||||||||  | | | ||| |||||||||||||||||||||    
T  10272171 ctgttgttttgtgttgttaaattctcttactttactcattatttattagtattgttgatgat 10272110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 155
Target Start/End: Original strand, 26922982 - 26923010
Alignment:
Q  127 ttaattgttgttgtttatgttgttaaatt 155  Q
    |||||||||||||||||||||||||||||    
T  26922982 ttaattgttgttgtttatgttgttaaatt 26923010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 8e-33; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 36733133 - 36733216
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  36733133 actattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 36733216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 22685526 - 22685443
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  22685526 actattgttgatgatgattttctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 22685443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 45679233 - 45679152
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  45679233 tattgttgatgatgatttgttgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 45679152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 36737286 - 36737369
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  |||||| | ||||||    
T  36737286 actattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtttataggtattgctaatgatg 36737369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 25587989 - 25588052
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtt 242  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25587989 actattgttgatgatgatttgctgttgttttatgttgataaattctcttatctaaattattgtt 25588052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 252
Target Start/End: Complemental strand, 44761886 - 44761835
Alignment:
Q  201 tgttgttttatgttgataaattctcttatctaaattattgtttattagtatt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44761886 tgttgttttatgttgataaattctcttatctaaattattgtttattagtatt 44761835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 10744620 - 10744677
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  10744620 aattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttctct 10744677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 1385234 - 1385301
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||   ||| |||||| |||||||    
T  1385234 attgttgatgatgatttgttgttgctttatgttgataaattctcttactcaaactattgtgtattagt 1385301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 229
Target Start/End: Original strand, 28346511 - 28346594
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||| |||||||||||| ||||||| ||||||||||||| | ||  ||||||||||||||| | |||||| ||||    
T  28346511 tgttgttaaattctcttacttgactcattatttattagtattgttgatgat-aaat--tgttgttttatgttgttgaattcttttat 28346594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 14180828 - 14180903
Alignment:
Q  187 tgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||| |||| ||| ||||||||  |||| | ||||||||||  |||| |||||||||||||||||||| ||||||    
T  14180828 tgatgttgatttgccgttgttttgcgttggtgaattctcttacttaaaatattgtttattagtattgttaatgatg 14180903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 10744538 - 10744572
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtg 111  Q
    ||||||||||||||||||| |||||||||||||||    
T  10744538 aaataattaatgagttgttattgagaaattatgtg 10744572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 227
Target Start/End: Original strand, 21317133 - 21317175
Alignment:
Q  185 gttgatgatgatatgctgttgttttatgttgataaattctctt 227  Q
    |||||||||||| |||||||||| | |||||||||||||||||    
T  21317133 gttgatgatgatttgctgttgttctgtgttgataaattctctt 21317175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 25140115 - 25140074
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||||||| ||||||| ||||    
T  25140115 aaataattaatgagttgttattgagaaatcatgtgaaccatt 25140074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 28346500 - 28346561
Alignment:
Q  200 ctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    |||||||||| ||||| ||||||||||||  | | | ||| |||||||||||||||||||||    
T  28346500 ctgttgttttgtgttgttaaattctcttacttgactcattatttattagtattgttgatgat 28346561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 261
Target Start/End: Complemental strand, 9255903 - 9255718
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct-acttgactcatttttt 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||     || | || || || ||||| ||||| |||||||||| |||| | | ||| |||    
T  9255903 aaataattaatgagttgttattgagaaattatgtgaagcattgttaatgatgaactgatgctgtttgtgttgataaattctcttacttaaattattgttt 9255804  T
Q  176 attactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||  ||||||||||||||| || ||||||||| |||||||||||| |||||  |||||||||||||||||  ||||||||||||    
T  9255803 attagcattgttgatgatgatttgttgttgttttgtgttgataaattttcttacttaaattattgtttattatgattgttgatgat 9255718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 261
Target Start/End: Original strand, 9314347 - 9314532
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct-acttgactcatttttt 175  Q
    ||||||||||||||||||| ||||||||||||||||||||||     || | || || || ||||| ||||| |||||||||| |||| | | ||| |||    
T  9314347 aaataattaatgagttgttattgagaaattatgtgaagcattgttaatgatgaactgatgctgtttgtgttgataaattctcttacttaaattattgttt 9314446  T
Q  176 attactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||  ||||||||||||||| || ||||||||| |||||||||||| |||||  |||||||||||||||||  ||||||||||||    
T  9314447 attagcattgttgatgatgatttgttgttgttttgtgttgataaattttcttacttaaattattgtttattatgattgttgatgat 9314532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 24271078 - 24271156
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  24271078 aaataattaatgagttgttattgagaaattatgtgaagcattaacattgtttaatttttgttgtttatgttgttaaatt 24271156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 15105359 - 15105430
Alignment:
Q  84 taatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    |||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  15105359 taatgagttgttattgagaaattatatgaagcattaacattgtttaattgttgttgtttatgttgttaaatt 15105430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 11314459 - 11314548
Alignment:
Q  173 tttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||| ||||||| |||||||  || |||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  11314459 tttattagtattgttaatgatgaattgatgttattttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 11314548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 15577317 - 15577375
Alignment:
Q  101 gaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  15577317 gaaattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 15577375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 37538098 - 37538021
Alignment:
Q  145 gttgttaaattctctacttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaatt 222  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||| |  || |||||||| |||||| ||||||    
T  37538098 gttgttaaattctctacttgactcattgtttattagtattgttgatgataaattgttgttgtttcatgttgttaaatt 37538021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 81 - 222
Target Start/End: Complemental strand, 25941158 - 25941016
Alignment:
Q  81 aattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttg-tttatgttgttaaattctc-tacttgactcattttttatt 178  Q
    ||||||||||||||| ||||||||||||||||||||||   | || | ||||  ||||| ||| |||||||||||| || |||||||||| || ||||||    
T  25941158 aattaatgagttgttattgagaaattatgtgaagcattgttgatgatgaattactgttgttttgtgttgttaaattttcttacttgactcgttgtttatt 25941059  T
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaatt 222  Q
    | ||||||||||||| |  || ||||| ||||||||| ||||||    
T  25941058 agtattgttgatgataaattgttgttg-tttatgttgttaaatt 25941016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 4692020 - 4692087
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| ||||||||  || |||||||||||||||| |  |||||||||||||||||||    
T  4692020 attgttgatgatgatttgctgttgcattgtgttgataaattctctaacttaaattattgtttattagt 4692087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 9255836 - 9255785
Alignment:
Q  211 tgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  9255836 tgttgataaattctcttacttaaattattgtttattagcattgttgatgatg 9255785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 9314414 - 9314465
Alignment:
Q  211 tgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  9314414 tgttgataaattctcttacttaaattattgtttattagcattgttgatgatg 9314465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 48217934 - 48218001
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||| ||||||| || ||||||| |||||||||||||||||||   |||||||||||||||||||    
T  48217934 attgttgttgatgatttgttgttgttctatgttgataaattctcttccttaaattattgtttattagt 48218001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 9744565 - 9744633
Alignment:
Q  182 attgttgatgatgatat-gctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| | | ||||||| | ||||||||||||||||||  |||||||||||||||||||    
T  9744565 attgttgatgatgattttgttgttgttctgtgttgataaattctcttacttaaattattgtttattagt 9744633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 155
Target Start/End: Original strand, 20254006 - 20254058
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    |||||||||| |||||||| |||||||||||||||||||||||| | ||||||    
T  20254006 aattatgtgaggcattaacattgtttaattgttgttgtttatgtagataaatt 20254058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 262
Target Start/End: Original strand, 11314405 - 11314480
Alignment:
Q  187 tgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||| ||| |||||||| ||||| | ||||||||||  |||| |||| ||||||||||||||| ||||||    
T  11314405 tgatgatgatttgccgttgttttgtgttgctgaattctcttacttaaactattatttattagtattgttaatgatg 11314480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 15577356 - 15577398
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  15577356 tttatgttgataaattctcttacttaaattattgtttattagt 15577398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 255
Target Start/End: Original strand, 36301913 - 36301987
Alignment:
Q  181 tattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgtt 255  Q
    |||||||||||||||  | |||||||||||||||| ||||||||||||  | | | ||| |||||||||||||||    
T  36301913 tattgttgatgatgaattactgttgttttatgttgttaaattctcttacttgactcattatttattagtattgtt 36301987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 4691981 - 4692022
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  4691981 aaataattaatgagttgttattgagaaattatgtgaaccatt 4692022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 157
Target Start/End: Original strand, 8136306 - 8136374
Alignment:
Q  88 gagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||  ||||||| ||||||||| |||||  || |||| |||||||||||||||||||||||||||    
T  8136306 gagttgttaatgagaaactatgtgaagtattaatattattta-ttgttgttgtttatgttgttaaattct 8136374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 13134316 - 13134373
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||| |||| ||||||||||||||| ||| ||||||    
T  13134316 aattatgtgaagcattaacattgttttattgattgttgtttatgttgataagttctct 13134373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 14154308 - 14154349
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  14154308 aaataattaatgagttgttattgagaaattatgtgaaccatt 14154349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 15138928 - 15138856
Alignment:
Q  84 taatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||  ||||||| ||||||||| || ||  || |||| |||||||||||||||||||||||||||    
T  15138928 taatgagttgttaatgagaaactatgtgaagtatcaatattattta-ttgttgttgtttatgttgttaaattct 15138856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 22001459 - 22001531
Alignment:
Q  84 taatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||  ||||||| ||||||||| || ||  || |||| |||||||||||||||||||||||||||    
T  22001459 taatgagttgttaatgagaaactatgtgaagtataaatattattta-ttgttgttgtttatgttgttaaattct 22001531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 43747264 - 43747223
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  43747264 aaataattaatgagttgttattgagaaattatgtgaaccatt 43747223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 36301939 - 36301987
Alignment:
Q  140 tttatgttgttaaattctct-acttgactcattttttattactattgtt 187  Q
    |||||||||||||||||||| |||||||||||| ||||||| |||||||    
T  36301939 tttatgttgttaaattctcttacttgactcattatttattagtattgtt 36301987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 25941123 - 25941044
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||||||||||||  | |||||||||| ||||| |||||| |||||  | | |  ||||||||||||||||||||||||    
T  25941123 attgttgatgatgaattactgttgttttgtgttgttaaattttcttacttgactcgttgtttattagtattgttgatgat 25941044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 43747225 - 43747158
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || |||||  || |||||||||||| ||| |  |||||||||||||||||||    
T  43747225 attgttgatgatgatttgttgttgcattgtgttgataaattttctaacttaaattattgtttattagt 43747158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 38294178 - 38294092
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||| ||| |||||||||||| ||||||| || |||||||| | |  || |||||||| |||||| |||||||| ||||    
T  38294178 tgttgttaaattatcttacttgactcattgtttattagtaatgttgatggtaaattgttgttgtttcatgttgttaaattcttttat 38294092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Original strand, 14154347 - 14154407
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtt 242  Q
    ||||||||||||||| | ||| ||  || ||||||||||||||||||  ||||||||||||    
T  14154347 attgttgatgatgattttctgatgcattgtgttgataaattctcttacttaaattattgtt 14154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 18985606 - 18985686
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||| |||||||  |||||||||||| ||||| ||||||||  ||  | |||||||| ||||||| |||||| ||||||    
T  18985606 attgttaatgatgaattgctgttgttttgtgttggtaaattcttctacatgaattattgcttattagcattgttaatgatg 18985686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 19000234 - 19000314
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||| |||||||  |||||||||||| ||||| ||||||||  ||  | |||||||| ||||||| |||||| ||||||    
T  19000234 attgttaatgatgaattgctgttgttttgtgttggtaaattcttctacatgaattattgcttattagcattgttaatgatg 19000314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 191
Target Start/End: Original strand, 36302031 - 36302079
Alignment:
Q  144 tgttgttaaattctct-acttgactcattttttattactattgttgatg 191  Q
    |||||||||||||||| |||||||||||| |||||||  ||||||||||    
T  36302031 tgttgttaaattctcttacttgactcattatttattagcattgttgatg 36302079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 64873 - 64790
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  64873 actattgttgatgatgatttgctgttgttgtatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 64790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 74323 - 74240
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| | ||||||    
T  74323 actattgttgatgatgatttgctgttgttttatgttgacaaaatctcttatctaaattattgtttattagtattgctaatgatg 74240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 67489 - 67564
Alignment:
Q  179 actattgttgatga-tgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattg 253  Q
    |||||||||||||| |||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  67489 actattgttgatgaatgagttgctgtagttttatgttgataaattctcttatctaaattattgtttattagtattg 67564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 48915 - 48837
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  48915 aaataattaatgagttgttattgagaaattatgtgaaacattaacattgtttaattgttgttgtttatgttgttaaatt 48837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 5079772 - 5079698
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattg 253  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079772 actattgttgatgatgatttgcttttgttttatgttgataaattctcttatctaaattattgtttattagtattg 5079698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 22343829 - 22343748
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatgt 263  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  22343829 attgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatgt 22343748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 22355489 - 22355408
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatgt 263  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||  ||||||||||||||||||||||| | |||||||    
T  22355489 attgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttattagtattgctaatgatgt 22355408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 2718128 - 2718184
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  2718128 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 2718184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 6574404 - 6574460
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  6574404 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 6574460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 36733932 - 36733988
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  36733932 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 36733988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 22482671 - 22482528
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct-acttgactcatttttt 175  Q
    ||||||||||||||||||| ||||||||||||||||  |||||    || | || || || ||||| ||||| |||||||||| |||| | | ||| |||    
T  22482671 aaataattaatgagttgttattgagaaattatgtgagacattattaatgatgaactgatgctgtttgtgttgataaattctcttacttaaattattgttt 22482572  T
Q  176 attactattgttgatgatgatatgctgttgttttatgttgataa 219  Q
    ||||  ||||||||||||||| |||||||||||| |||||||||    
T  22482571 attagcattgttgatgatgatttgctgttgttttgtgttgataa 22482528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 229
Target Start/End: Complemental strand, 23882686 - 23882603
Alignment:
Q  146 ttgttaaattctctacttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| |  || |||||||| |||||| |||||||| ||||    
T  23882686 ttgttaaattctctacttgactcattgtttattagtattgttgatgataaattgttgttgtttcatgttgttaaattcttttat 23882603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 229
Target Start/End: Complemental strand, 23885377 - 23885292
Alignment:
Q  144 tgttgttaaattctctacttgactcattttttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttat 229  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||  |  || |||||||| |||||| |||||||| ||||    
T  23885377 tgttgttaaattctctacttgactcattgtttattagtattgttgatgacaaattgttgttgtttcatgttgttaaattcttttat 23885292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 20518401 - 20518481
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||| ||||||  || ||||||||| ||||||||||||||||||  ||||||||||||||| ||||||| | ||||||    
T  20518401 attgttggtgatgaattgttgttgttttgtgttgataaattctcttacttaaattattgtttataagtattgctaatgatg 20518481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 22473120 - 22473064
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||| | ||||||||    
T  22473120 aattatgtgaaacattaacattgtttaattgttgttgtttatgttgatgaattctct 22473064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 22482604 - 22482553
Alignment:
Q  211 tgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||||||||    
T  22482604 tgttgataaattctcttacttaaattattgtttattagcattgttgatgatg 22482553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 38988111 - 38988044
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| ||||||||  || |||||||||||||||| |  |||||||||||||||||||    
T  38988111 attgttgatgatgatttgctgttgcattgtgttgataaattctctaacttaaattattgtttattagt 38988044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 39019208 - 39019141
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| ||||||||  || |||||||||||||||| |  |||||||||||||||||||    
T  39019208 attgttgatgatgatttgctgttgcattgtgttgataaattctctaacttaaattattgtttattagt 39019141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 12800285 - 12800228
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  12800285 aattatgtgaagcattaacattgtttaattgattgttgtttatgttgataagttctct 12800228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 6574441 - 6574483
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  6574441 tttatgttgataaattctcttacttaaattattgtttattagt 6574483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 38050200 - 38050146
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    |||||||||||||||| | | || | |||||||||||||||||||||||||||||    
T  38050200 aattatgtgaagcattgatgatgataaattgttgttgtttatgttgttaaattct 38050146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 36406687 - 36406732
Alignment:
Q  114 gcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||| ||||||||||||||||||||||| || ||||||||||    
T  36406687 gcattaacattgtttaattgttgttgtttatggtgataaattctct 36406732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 262
Target Start/End: Complemental strand, 12800247 - 12800192
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||| ||||||||  ||||||| ||||||||||||||| | ||||||    
T  12800247 tttatgttgataagttctcttacttaaattactgtttattagtattgctaatgatg 12800192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 18820535 - 18820602
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||| |||||||||| || ||||||| | |||| |||||||||||||  ||||||||| |||||||||    
T  18820535 attggtgatgatgatttgttgttgttctgtgttaataaattctcttacttaaattattatttattagt 18820602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 21513070 - 21513007
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttat 245  Q
    ||||||||||||||| || |||||  || |||||||||||||||| |  |||||||||||||||    
T  21513070 attgttgatgatgatttgttgttgcattgtgttgataaattctctaacttaaattattgtttat 21513007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 246
Target Start/End: Original strand, 36733969 - 36734008
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttatt 246  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  36733969 tttatgttgataaattctcttacttaaattattgtttatt 36734008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 2718165 - 2718207
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||| ||||||||||||    
T  2718165 tttatgttgataaattctcttacttaaattgttgtttattagt 2718207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 12800367 - 12800333
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtg 111  Q
    ||||||||||||||||||| |||||||||||||||    
T  12800367 aaataattaatgagttgttattgagaaattatgtg 12800333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 17979785 - 17979851
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattag 248  Q
    ||||||||||||||| || |||||  || ||||||||||||| ||||  |||||||||| |||||||    
T  17979785 attgttgatgatgatttgttgttgcattgtgttgataaattcccttacttaaattattgcttattag 17979851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 22473083 - 22473041
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  22473083 tttatgttgatgaattctcttacttaaattattgtttattagt 22473041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 36406713 - 36406755
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||| |||||||||||||||  |||||||||||||||||||    
T  36406713 tttatggtgataaattctcttacttaaattattgtttattagt 36406755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 111
Target Start/End: Original strand, 36729100 - 36729134
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtg 111  Q
    ||||||||||||||||||| |||||||||||||||    
T  36729100 aaataattaatgagttgttattgagaaattatgtg 36729134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 253
Target Start/End: Original strand, 36729220 - 36729266
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagtattg 253  Q
    ||||||||||||| ||||||||  ||||||| |||||||||||||||    
T  36729220 tttatgttgataagttctcttacttaaattactgtttattagtattg 36729266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 31724380 - 31724437
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||| | ||| ||||||    
T  31724380 aattatgtgaagcactaacattgtttaattgattgttgtttatgtcgataagttctct 31724437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 38988150 - 38988109
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||    
T  38988150 aaataattagtgagttgttattgagaaattatgtgaaccatt 38988109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 39019247 - 39019206
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||    
T  39019247 aaataattagtgagttgttattgagaaattatgtgaaccatt 39019206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 22310721 - 22310801
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||  || ||||||||| ||||| ||||| || |||  | |||||||| ||||||| |||||| ||||||    
T  22310721 attgttgatgatgaattgttgttgttttgtgttgttaaatccttttaaatgaattattgcttattagcattgttaatgatg 22310801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 22480413 - 22480453
Alignment:
Q  221 ttctcttatctaaattattgtttattagtattgttgatgat 261  Q
    ||||||||  |||||||||||||||||| ||||||||||||    
T  22480413 ttctcttacttaaattattgtttattaggattgttgatgat 22480453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 8129 - 8198
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattag 248  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8129 actattgttgatgatgatttgttgttgttttatgttgataaattctcttatctaaattattgtttattag 8198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 14838 - 14759
Alignment:
Q  183 ttgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  14838 ttgttgatgatgattttttgttgttttatgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 14759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 3744 - 3661
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | ||||||    
T  3744 actattgttaatgatgatttgctgttgttttatattgataaattctcttatataaattatagtttattagtattgctaatgatg 3661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 9866 - 9783
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| | ||||||    
T  9866 actattgttaatgatgatttgctgttgttttatattgataaattctcttatataaattatagtttattagtattgctaatgatg 9783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 8338 - 8409
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattg 253  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  8338 attgttgatgatgatttgctgttgttttatgttgataaatcctcttatctaaattaatgtttattagtattg 8409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 78 - 156
Target Start/End: Complemental strand, 1619 - 1541
Alignment:
Q  78 aataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattc 156  Q
    |||||||||||||||||| |||||||| || || |||||||||| ||||||||||||||||||||||||||||||||||    
T  1619 aataattaatgagttgttattgagaaactaagtaaagcattaacattgtttaattgttgttgtttatgttgttaaattc 1541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 10429 - 10507
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    ||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||    
T  10429 aaataataaatgagttgttattgagaaattatataaagcattaacattgtttaattgttgttgtttatgttgttaaatt 10507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 27892 - 27969
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaat 154  Q
    ||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  27892 aaataataaatgagttgttattgagaaattatattaagcattaacattgtttaattgttgttgtttatgttgttaaat 27969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 9342 - 9258
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaatta-ttgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  9342 actattgttgatgatgattttcttttgttttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatg 9258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0379; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 16534 - 16450
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaatta-ttgtttattagtattgttgatgatg 262  Q
    |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||    
T  16534 actattgttgatgatgattttcttttgttttatgttgataaattctcttatctaaattatttgtttattagtattgctaatgatg 16450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0285 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 18588 - 18508
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||| ||  ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  18588 aaataattaatgagttgttattaggaaatcatgtgaagcatcaacattgtttaattgttgttgtttatgttgttaaattct 18508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 19238 - 19318
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||    
T  19238 attgttgatgataatttactgttgttttatgttgataaatcctcttatctaaattattgtttattagtattgctaatgatg 19318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 249
Target Start/End: Complemental strand, 15198 - 15128
Alignment:
Q  179 actattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||    
T  15198 actattgttgatgatgatttgctgttgttttatgttgataaattctcttacttaaattattgttcattagt 15128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 798 - 865
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||  |||||||||||||||||||    
T  798 attgttgatgatgatttgctgttgctttatgttgataaattctcttacttaaattattgtttattagt 865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 24383 - 24309
Alignment:
Q  187 tgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  24383 tgatgatgatttgttgttgttt-atgttgataaattctcttatctaaattattgtttattagtattgctaatgatg 24309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 17864 - 17808
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  17864 aattatgtgaagcattaacattgtttaattgttgttgtttatgttgataaattctct 17808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 17827 - 17785
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  ||||||| |||||||||||    
T  17827 tttatgttgataaattctcttacttaaattagtgtttattagt 17785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 247
Target Start/End: Complemental strand, 39452 - 39387
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttatta 247  Q
    ||||||||||||||| || ||||||||| ||||||||||||||||||  |||||||||||||||||    
T  39452 attgttgatgatgatttgttgttgttttgtgttgataaattctcttacttaaattattgtttatta 39387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 25282 - 25226
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||    
T  25282 aattatgtaaagcattaacattgtttaattgttgttgtttatgttgataaattctct 25226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 4965 - 5032
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || ||||||| | ||||||||||||||||||  |||||||||||||||||||    
T  4965 attgttgatgatgatttgttgttgttctgtgttgataaattctcttaattaaattattgtttattagt 5032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 6105 - 6172
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || ||||||| | ||||||||||||||||||  |||||||||||||||||||    
T  6105 attgttgatgatgatttgttgttgttctgtgttgataaattctcttacttaaattattgtttattagt 6172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 61400 - 61333
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| || |||||||   ||||||||||||||||||| |||||||||||||||||||    
T  61400 attgttgatgatgatttgttgttgttcagtgttgataaattctcttatttaaattattgtttattagt 61333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 72883 - 72853
Alignment:
Q  127 ttaattgttgttgtttatgttgttaaattct 157  Q
    |||||||||||||||||||||||||||||||    
T  72883 ttaattgttgttgtttatgttgttaaattct 72853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 3145 - 3089
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||||    
T  3145 aattatgtgaagtattaacattgtttaattattgttgtttatgttgataaattctct 3089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 15650 - 15583
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||| |||||||   || ||||||||||||||||||  |||||||||||||||||||    
T  15650 attgttgatgatgatttgctgttacattgtgttgataaattctcttacataaattattgtttattagt 15583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 15689 - 15648
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  15689 aaataattaatgagttgttattgagaaattatgtgaaccatt 15648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 646 - 723
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaatt 155  Q
    ||||| ||||| ||||||| ||||||||||||| ||||||||||  ||| |||||||||||  ||||||||||||||||    
T  646 aaatatttaataagttgttattgagaaattatgagaagcattaatattg-ttaattgttgtcatttatgttgttaaatt 723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 18985 - 18929
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||||||||| || ||  |||||||||||||||||||||||||| ||||||||||    
T  18985 aattatgtgaagtatcaatattgtttaattgttgttgtttatgttgataaattctct 18929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 18948 - 18906
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    ||||||||||||||||||||||  |||||||||||||||||||    
T  18948 tttatgttgataaattctcttacttaaattattgtttattagt 18906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 188314 - 188360
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttg 148  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||    
T  188314 aattatgtgaagcattaacattgtttaattgattgttgtttatgttg 188360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1716 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold1716
Description:

Target: scaffold1716; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 1401 - 1320
Alignment:
Q  173 tttattactattgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgt 254  Q
    ||||||| ||||||| |||||||  || || | ||||||||||||||||||||| |  | ||||||||||||||||| ||||    
T  1401 tttattagtattgttaatgatgaattgatgctattttatgttgataaattctctcacatgaattattgtttattagttttgt 1320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1716; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 1425 - 1380
Alignment:
Q  217 taaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||||||||| |  ||||||||||||||||||||||||| ||||||    
T  1425 taaattctctcacataaattattgtttattagtattgttaatgatg 1380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 3526 - 3458
Alignment:
Q  88 gagttgtttttgagaaattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||  ||||||| |||| |||| |||||  ||||||| |||||||||||||||||||||||||||    
T  3526 gagttgttaatgagaaactatgagaagtattaatattgttta-ttgttgttgtttatgttgttaaattct 3458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0645
Description:

Target: scaffold0645; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 886 - 943
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattg-ttgttgtttatgttgttaaattctct 159  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||| ||| ||||||    
T  886 aattatgtgaaacattaacattgtttaattgattgttgtttatgttgataagttctct 943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0645; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 808 - 849
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    |||||||||||||| |||| ||||||||||||||||| ||||    
T  808 aaataattaatgagatgttattgagaaattatgtgaaccatt 849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Complemental strand, 3563 - 3507
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattctct 159  Q
    |||||| | |||||||||| |||||||||| |||||||||||| || ||||||||||    
T  3563 aattatttaaagcattaacattgtttaattattgttgtttatgctgataaattctct 3507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Complemental strand, 3526 - 3484
Alignment:
Q  207 tttatgttgataaattctcttatctaaattattgtttattagt 249  Q
    |||||| |||||||||||||||  |||||||||||||||||||    
T  3526 tttatgctgataaattctcttacttaaattattgtttattagt 3484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 8519 - 8599
Alignment:
Q  182 attgttgatgatgatatgctgttgttttatgttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    ||||||||||||||  ||  |||||||   |||| |||||||||| |  ||||||||||||||||||||||||| ||||||    
T  8519 attgttgatgatgaattgtcgttgtttcgagttgttaaattctctcacataaattattgtttattagtattgttaatgatg 8599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1212 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 157
Target Start/End: Original strand, 203 - 233
Alignment:
Q  127 ttaattgttgttgtttatgttgttaaattct 157  Q
    |||||||||||||||||||||||||||||||    
T  203 ttaattgttgttgtttatgttgttaaattct 233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 27614 - 27560
Alignment:
Q  103 aattatgtgaagcattaacgttgtttaattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||   | || | |||||||||||||||||||||||||||||    
T  27614 aattatgtgaagcattgttgatgataaattgttgttgtttatgttgttaaattct 27560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 6849 - 6899
Alignment:
Q  212 gttgataaattctcttatctaaattattgtttattagtattgttgatgatg 262  Q
    |||| |||||||||| |  ||||||||||||||||||||||||| ||||||    
T  6849 gttgttaaattctctcacataaattattgtttattagtattgttaatgatg 6899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0742 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0742
Description:

Target: scaffold0742; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 2788 - 2747
Alignment:
Q  77 aaataattaatgagttgtttttgagaaattatgtgaagcatt 118  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||    
T  2788 aaataattaatgagttgttcttgaggaattatgtgaaccatt 2747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 157
Target Start/End: Complemental strand, 14355 - 14326
Alignment:
Q  128 taattgttgttgtttatgttgttaaattct 157  Q
    ||||||||||||||||||||||||||||||    
T  14355 taattgttgttgtttatgttgttaaattct 14326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University