View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_26 (Length: 229)
Name: NF0323_low_26
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 56 - 217
Target Start/End: Original strand, 242962 - 243123
Alignment:
| Q |
56 |
ctgttgcagataaagtttggagtgttttaacttcaatgggaaacatagctcttgctagcacttacgctatggttatttacgacataatggtaacatatca |
155 |
Q |
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| T |
242962 |
ctgttgcagataaagtttggagtgttttaacttcaatgggaaacatagctcttgctagcacttacgctatggttatttacgacataatggtaacatatca |
243061 |
T |
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| Q |
156 |
cagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggattt |
217 |
Q |
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| T |
243062 |
cagttcattttttataatcattattaaaagcaaataaaaagatgtagtaacaagttggattt |
243123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 60 - 180
Target Start/End: Complemental strand, 222301 - 222181
Alignment:
| Q |
60 |
tgcagataaagtttggagtgttttaacttcaatgggaaacatagctcttgctagcacttacgctatggttatttacgacataatggtaacatatcacagt |
159 |
Q |
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| T |
222301 |
tgcagagaaagtgtggcgtgtttgcacttcaatgggaaacatagctcttgctagcacttatgctactgttatttacgacataatggtaaactaccacaat |
222202 |
T |
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| Q |
160 |
tcattttttataatcattatt |
180 |
Q |
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| T |
222201 |
tcacttactataatcattatt |
222181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 12030211 - 12030141
Alignment:
| Q |
87 |
ttcaatgggaaacatagctcttgctagcacttacgctatggttatttacgacataatggtaacatatcaca |
157 |
Q |
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| T |
12030211 |
ttcaatgggaaacatagcacttgcttgcacttatgctactgttatttacgacataatggtaaaaaatcaca |
12030141 |
T |
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