View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0323_low_3 (Length: 440)
Name: NF0323_low_3
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_3 |
 | |
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| [»] scaffold0271 (1 HSPs) |
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| [»] scaffold0640 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 93 - 431
Target Start/End: Original strand, 41199871 - 41200208
Alignment:
| Q |
93 |
agaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttt |
192 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41199871 |
agaaatgaactt-gttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatatgttt |
41199969 |
T |
|
| Q |
193 |
tgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagt |
292 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
41199970 |
tgcgtaataaatgcatatcacacgattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacaaaatttatagt |
41200069 |
T |
|
| Q |
293 |
tttcagcaatatggacatttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtggatg |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
41200070 |
tttcagcaatatggacatttagttgtcttgaaactagatgcaatttgcaggaaaaaaatatttagttgaagaagcctaagttagaatttggaagtggaag |
41200169 |
T |
|
| Q |
393 |
gacctacttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
41200170 |
gacctacttattttcaaaggacatcaattttaggataat |
41200208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 93 - 431
Target Start/End: Original strand, 1041559 - 1041887
Alignment:
| Q |
93 |
agaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttt |
192 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
1041559 |
agaaatgaactt-gttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttt |
1041657 |
T |
|
| Q |
193 |
tgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagt |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1041658 |
tgcgtaataaatgcatatcacacgattcattctttcgtatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagt |
1041757 |
T |
|
| Q |
293 |
tttcagca----atatggacatttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtg |
388 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||| |
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|
| T |
1041758 |
tttcggcaatatatatggacatttagttgtcttgaaactagatgcaatttgcaggaaaaaaatatttagttga-----------tt--taattggaagtg |
1041844 |
T |
|
| Q |
389 |
gatggacctacttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||| |
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|
| T |
1041845 |
gatgaacctacttgttttcaaaggacatcaattttaggataat |
1041887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 104 - 431
Target Start/End: Original strand, 41192634 - 41192952
Alignment:
| Q |
104 |
ttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaa |
203 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41192634 |
ttgttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttttgcgtaataaa |
41192733 |
T |
|
| Q |
204 |
tgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagttttcagca--- |
300 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
41192734 |
tgcatatcacacgattcattctttcgtatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagttttcggcaata |
41192833 |
T |
|
| Q |
301 |
-atatggacatttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtggatggacctac |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||||||| |||||| |
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|
| T |
41192834 |
tatatggacatttagttgtcttgaaactagatgcaatttgcaggaaaaaaatatttagttga-----------tt--taattggaagtggatgaacctac |
41192920 |
T |
|
| Q |
400 |
ttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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|
| T |
41192921 |
ttgttttcaaaggacatcaattttaggataat |
41192952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 170 - 431
Target Start/End: Original strand, 41407385 - 41407641
Alignment:
| Q |
170 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggta |
269 |
Q |
| |
|
||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
41407385 |
tcagttagatttctcattagttttgcgtaattaaagcataacacactattcattctttctaatcagtatttggaactgccttgctgcaaaacaaaaagta |
41407484 |
T |
|
| Q |
270 |
ggaaggttgacagaatttatagttttcagcaatatggac-atttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcc |
368 |
Q |
| |
|
||| ||||||||| |||| | || | ||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
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|
| T |
41407485 |
tgaaagttgacagatttta----tctcggtaatatggacaatttagttgtcttaaaactagatgcaatttgcaggaaaaaaaaa--tagttgaagaagcc |
41407578 |
T |
|
| Q |
369 |
taagttagaatttggaagtggatggacctacttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
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|
| T |
41407579 |
aaagtctgaatttggaagtggatggacctacatgttttcaaaggacatccattttaggataat |
41407641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 93 - 431
Target Start/End: Original strand, 33323150 - 33323478
Alignment:
| Q |
93 |
agaaatgaactttgttttaggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttt |
192 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33323150 |
agaaatgaactt-gttttagcagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatcagttt |
33323248 |
T |
|
| Q |
193 |
tgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagt |
292 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33323249 |
tgcgtaataaatgcatatcacacgattcattctttcgtatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagt |
33323348 |
T |
|
| Q |
293 |
tttcagca----atatggacatttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcctaagttagaatttggaagtg |
388 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||||||| |
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|
| T |
33323349 |
tttcggcaatatatatggacatttagttgtcttgaaactagatgcaatttgcaggaaaaaaatatttagttga-----------tt--taattggaagtg |
33323435 |
T |
|
| Q |
389 |
gatggacctacttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33323436 |
gatgaacctacttgttttcaaaggacatcaattttaggataat |
33323478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 170 - 431
Target Start/End: Complemental strand, 24113 - 23857
Alignment:
| Q |
170 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggta |
269 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
24113 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttctaatcagtatttggaactgccttgctgcaaaacaaaaagta |
24014 |
T |
|
| Q |
270 |
ggaaggttgacagaatttatagttttcagcaatatggac-atttagttgtcttgaaactagatgcaatttgcaggnnnnnnntatttagttgaagaagcc |
368 |
Q |
| |
|
||| ||||||||| |||| | || | ||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
24013 |
tgaaagttgacagatttta----tctcggtaatatggacaatttagttgtcttaaaactagatgcaatttgcaggaaaaaaaaa--tagttgaagaagcc |
23920 |
T |
|
| Q |
369 |
taagttagaatttggaagtggatggacctacttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
23919 |
aaagtctgaatttggaagtggatggacctacatgttttcaaaggacatccattttaggataat |
23857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 170 - 343
Target Start/End: Complemental strand, 3549 - 3379
Alignment:
| Q |
170 |
tcagttagatttctcatctgttttgcgtaataaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggta |
269 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| ||| |
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|
| T |
3549 |
tcagttagatttctcatcagttttgcgtaattaaagcataacacactattcattctttctaatcagtatttggaactgccttgctgcaaaacaaaaagta |
3450 |
T |
|
| Q |
270 |
ggaaggttgacagaatttatagttttcagcaatatggac-atttagttgtcttgaaactagatgcaatttgcagg |
343 |
Q |
| |
|
||| ||||||||| |||| | || | ||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3449 |
tgaaagttgacagatttta----tctcggtaatatggacaatttagttgtcttaaaactagatgcaatttgcagg |
3379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 431
Target Start/End: Complemental strand, 3342 - 3301
Alignment:
| Q |
390 |
atggacctacttgttttcaaaggacatcaattttagaataat |
431 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||| ||||| |
|
|
| T |
3342 |
atggacctacatgttttcaaaggacatccattttaggataat |
3301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 261
Target Start/End: Complemental strand, 16700496 - 16700352
Alignment:
| Q |
112 |
ggagtcttcacaatgtgtaagttggaacaggaggatactactaatctgtttttgaatgtcagttagatttctcatctgttttgcgtaataaatgcatatc |
211 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||| ||||| | ||| || |||||| |||| ||||||||| |||||||| ||||||| ||||||||||||| | |
|
|
| T |
16700496 |
ggagtctt-acaatgtgtcagttgaaacagcaggatgcgactgatatgttttcgaatatcagttagacttctcatcagttttgcataataaatgcatacc |
16700398 |
T |
|
| Q |
212 |
acaccattcattctttcttatcagtatttgggactgccttgctgcaaaac |
261 |
Q |
| |
|
| | | |||||||||||||| | |||||| || ||||||||||||| |
|
|
| T |
16700397 |
ata----ttattctttcttatcattttttgggtttgacttgctgcaaaac |
16700352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 340
Target Start/End: Original strand, 12001799 - 12001938
Alignment:
| Q |
201 |
aaatgcatatcacaccattcattctttcttatcagtatttgggactgccttgctgcaaaacaaaaggtaggaaggttgacagaatttatagttttcagca |
300 |
Q |
| |
|
||||||||||||| | ||| |||||| | |||||| ||||| |||||||||||||||| ||||| || | | |||||||| ||||| |||| ||||| |
|
|
| T |
12001799 |
aaatgcatatcactctattatttctttgt-atcagtttttggaactgccttgctgcaaactgaaaggaagaaggtttgacagattttatggtttccagca |
12001897 |
T |
|
| Q |
301 |
atatggac-atttagttgtcttgaaactagatgcaatttgc |
340 |
Q |
| |
|
||||| || || | | || || ||||||||||||||||||| |
|
|
| T |
12001898 |
atatgaacaatctggctgactagaaactagatgcaatttgc |
12001938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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