View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0323_low_5 (Length: 418)

Name: NF0323_low_5
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0323_low_5
NF0323_low_5
[»] chr4 (2 HSPs)
chr4 (13-297)||(47718827-47719113)
chr4 (13-297)||(47854970-47855256)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 47718827 - 47719113
Alignment:
Q  13 gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47718827 gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc 47718926  T
Q  113 gacgacgatttcttgggttttaccgtcatcggagccggagaagtttccgttgattgcacagacaaagcc-ctagct-gttgcagagtgagattgtagaga 210  Q
    ||||||||||||||||||  ||||||| || |||||||||||||| ||||||||||||||||||| |||  | | | |||||||||||||||||||||||    
T  47718927 gacgacgatttcttgggtaataccgtcgtctgagccggagaagttgccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagaga 47719026  T
Q  211 tacatggctatgacaaagcgatgcacagaagggtttagggttttagcgatttcgatatggtaattgtgaagggtttacggttatagc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47719027 tacatggctatgacaaagcgatgcacagaagggtttagggttttagagatttcgatatggtaattgtgaagggtttacggttatagc 47719113  T

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Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 47855256 - 47854970
Alignment:
Q  13 gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47855256 gagacagggagcgaatggtgccgaaaacttggacggaaaggattgattgaatgcggccaaatttgtcggggcgaagaagttcgagaaccttgcctctggc 47855157  T
Q  113 gacgacgatttcttgggttttaccgtcatcggagccggagaagtttccgttgattgcacagacaaagcc-ctagct-gttgcagagtgagattgtagaga 210  Q
    ||||||||||||||||||  ||||||| || |||||||||||||| ||||||||||||||||||| |||  | | | |||||||||||||||||||||||    
T  47855156 gacgacgatttcttgggtaataccgtcgtctgagccggagaagttgccgttgattgcacagacaatgccggtgggtcgttgcagagtgagattgtagaga 47855057  T
Q  211 tacatggctatgacaaagcgatgcacagaagggtttagggttttagcgatttcgatatggtaattgtgaagggtttacggttatagc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47855056 tacatggctatgacaaagcgatgcacagaagggtttagggttttagagatttcgatatggtaattgtgaagggtttacggttatagc 47854970  T

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