View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_6 (Length: 416)
Name: NF0323_low_6
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 406
Target Start/End: Complemental strand, 3088542 - 3088167
Alignment:
| Q |
30 |
aatccaacgtgcatcggctgatacaaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctg |
129 |
Q |
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| T |
3088542 |
aatccaacgtgcatcggctgatatgaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctg |
3088443 |
T |
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| Q |
130 |
gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnnnnaacaaaatct |
229 |
Q |
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| T |
3088442 |
gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatagtatttttttttttt-aacaaaatct |
3088344 |
T |
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| Q |
230 |
ccagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaataaatgacagacatgagttccttacatctacgatcagatgttccct |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3088343 |
ccagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgatcagatgttccct |
3088244 |
T |
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| Q |
330 |
ctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatggcagtcccctatg |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
3088243 |
ctttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaaggcagtcccctatg |
3088167 |
T |
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