View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_7 (Length: 414)
Name: NF0323_low_7
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0323_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 3088542 - 3088167
Alignment:
Q |
30 |
aatccaacgtgcatcggctgatacaaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctg |
129 |
Q |
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T |
3088542 |
aatccaacgtgcatcggctgatatgaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctg |
3088443 |
T |
 |
Q |
130 |
gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnn-aacaaaatctc |
228 |
Q |
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T |
3088442 |
gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatagtattttttttttttaacaaaatctc |
3088343 |
T |
 |
Q |
229 |
cagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaataaatgacagacatgagttccttacatctacgatcagatgttccctc |
328 |
Q |
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T |
3088342 |
cagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgatcagatgttccctc |
3088243 |
T |
 |
Q |
329 |
tttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatggcagtcccctatg |
404 |
Q |
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T |
3088242 |
tttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaaggcagtcccctatg |
3088167 |
T |
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