View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0323_low_7 (Length: 414)

Name: NF0323_low_7
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0323_low_7
NF0323_low_7
[»] chr2 (1 HSPs)
chr2 (30-404)||(3088167-3088542)


Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 30 - 404
Target Start/End: Complemental strand, 3088542 - 3088167
Alignment:
30 aatccaacgtgcatcggctgatacaaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctg 129  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3088542 aatccaacgtgcatcggctgatatgaaatgaaagatatctatgataagacaaagggagtaatatgataaaagaaattttaaaaatctttagacaaacctg 3088443  T
130 gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatggtannnnnnnnnnn-aacaaaatctc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||            |||||||||||    
3088442 gtgaatatctcccatgaagtgtgacaagaacaataatgcctcggtcatattatctgcaatatctccagttaatagtattttttttttttaacaaaatctc 3088343  T
229 cagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaataaatgacagacatgagttccttacatctacgatcagatgttccctc 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
3088342 cagtaattaatatcatgaagtaaaataagtctaaaaatttctgaaagggaaaaaaaatgacagacatgagttccttacatctacgatcagatgttccctc 3088243  T
329 tttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatatcctcatggcagtcccctatg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
3088242 tttgtaatgagaaagttgagaagtgaaatttttgatagctcctgcaacacacatgtcctcaaggcagtcccctatg 3088167  T

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