View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0323_low_8 (Length: 405)
Name: NF0323_low_8
Description: NF0323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0323_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 30 - 398
Target Start/End: Complemental strand, 27814536 - 27814168
Alignment:
| Q |
30 |
gcaaccacaattgtcgatgatgtttgtcgaacgttcctcactagcatgggctggtgtacatgcaaacacactttaacattcaagtaattatggactaaag |
129 |
Q |
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| T |
27814536 |
gcaaccacaattgacaatgatgtttgttgaacgttcctcactagcgtgggctggtgtacatgcaaagacactttaacattcaagtaattatggactaaag |
27814437 |
T |
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| Q |
130 |
tttgaagaatatcttggaatgagaaattcctaaannnnnnnaatacggtgctctatttatagattcaaaagagataactgtttgatggcattgagagctc |
229 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
27814436 |
tttgaagaatatcttggaatgagaaattcctacatttttttaatacggtgctctatttatagattcaaaagagataactatttgatggcattgagaactc |
27814337 |
T |
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| Q |
230 |
ttatggtctttgaacgccttattcagtccttcagtgtctttactggcacacataatctttagattctttgaagagctttattaaatgataggggaaaaag |
329 |
Q |
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|||||||||||||| |||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27814336 |
ttatggtctttgaatgccttattcagtccttcactgtcttgactggcacacatagtctttagattctttgaagagctttattaaatgataggggaaaaag |
27814237 |
T |
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| Q |
330 |
tgcaattaagcatttacattatttaaattatgtttgattctaaattgattatattgcccattcatctca |
398 |
Q |
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| T |
27814236 |
tgcaattaagcctttacattatttaaattatgtttgattctaaattgattatattgcccattcatctca |
27814168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 27816055 - 27815944
Alignment:
| Q |
204 |
taactgtttgatggcattgagagctcttatggtctttgaacgccttattcagtccttcagtgtctttactggcacacataatctttagattctttgaaga |
303 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27816055 |
taactgtttgatggcatggagagctcttatggactttgaacgccttattcaatgcttcattgtctttactggcacacataatctttagattctttgaaga |
27815956 |
T |
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| Q |
304 |
gctttattaaat |
315 |
Q |
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| T |
27815955 |
gctttattaaat |
27815944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 104 - 205
Target Start/End: Complemental strand, 27816207 - 27816106
Alignment:
| Q |
104 |
aacattcaagtaattatggactaaagtttgaagaatatcttggaatgagaaattcctaaannnnnnnaatacggtgctctatttatagattcaaaagaga |
203 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||| || | |||| |||||||||||||||||||||||||||| |
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| T |
27816207 |
aacattcaagtaattatggactcatgtttgaagaatatcttggaatgagaaattcgtacatttttttaatatggtgctctatttatagattcaaaagaga |
27816108 |
T |
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| Q |
204 |
ta |
205 |
Q |
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|| |
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| T |
27816107 |
ta |
27816106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 100
Target Start/End: Complemental strand, 27816537 - 27816473
Alignment:
| Q |
36 |
acaattgtcgatgatgtttgtcgaacgttcctcactagcatgggctggtgtacatgcaaacacac |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||| || | |||||||| |||||| |||| |
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| T |
27816537 |
acaattgtcgatgatgtttgttgaacgttcctcactagcgtgaggtggtgtacctgcaaagacac |
27816473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 38710990 - 38710859
Alignment:
| Q |
30 |
gcaaccacaattgtcgatgatgtttgtcgaacgttcctcactagcatgggctggtgtacatgcaaacacactttaacattcaagtaattatggactaaag |
129 |
Q |
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||||| ||||||||||| | |||||| |||||||| |||||||| |||| |||||||| |||||| ||||| |||| |||||||||||| || || ||| |
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| T |
38710990 |
gcaactacaattgtcgaaggcgtttgttgaacgttcttcactagcgtgggatggtgtacttgcaaagacactctaacgttcaagtaattaaggtctcaag |
38710891 |
T |
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| Q |
130 |
----tttgaagaatatcttggaatgagaaatt |
157 |
Q |
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||||| |||||||||||| |||||||| |
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| T |
38710890 |
gtgttttgaggaatatcttggaccgagaaatt |
38710859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 43323567 - 43323622
Alignment:
| Q |
342 |
tttacattatttaaattatgtttgattctaaattgattatattgcccattcatctca |
398 |
Q |
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||||||| ||||| ||||||||| ||||||||||||||||||||| ||||| ||||| |
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| T |
43323567 |
tttacatcatttagattatgttt-attctaaattgattatattgctcattcttctca |
43323622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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