View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0324_low_1 (Length: 471)
Name: NF0324_low_1
Description: NF0324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0324_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 11 - 442
Target Start/End: Complemental strand, 41702502 - 41702072
Alignment:
| Q |
11 |
cacagagaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattatgcatctgtttggtatttttgtttctctattt |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
41702502 |
cacagagaaagagcttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattatattgtgcatctgtttggtatttttgtttctctattt |
41702403 |
T |
|
| Q |
111 |
tatatcatactcctcaaactgtattgtctttgataattatagaactattacaacttacactttgctaaaaattcaattgatacttctatttatttcttct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702402 |
tatatcatactcctcaaactgtattgtctttgataattatagaactattacaacttacgctttgctaaaaattcaattgatacttctatttatttcttct |
41702303 |
T |
|
| Q |
211 |
gtttgcagaagcggaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgata |
310 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702302 |
gtttgcagaagctgaataacacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgat- |
41702204 |
T |
|
| Q |
311 |
aaaatcgataatgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtg |
410 |
Q |
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||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702203 |
aaaatagatagtgttgttggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtg |
41702104 |
T |
|
| Q |
411 |
catacttgtgtttgtgttgtctctgctgctcc |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
41702103 |
catacttgtgtttgtgttgtctctgctgctcc |
41702072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 54074347 - 54074692
Alignment:
| Q |
11 |
cacagagaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattatgcatctgtttggtatttttgtttctctattt |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
54074347 |
cacagagaaagagcttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattatattgtgcatctgtttggtatttttgtttctctattt |
54074446 |
T |
|
| Q |
111 |
tatatcatactcctcaaactgtattgtctttgataattatagaactattacaacttacactttgctaaaaattcaattgatacttctatttatttcttct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54074447 |
tatatcatactcctcaaactgtattgtctttgataattatagaactattacaacttacgctttgctaaaaattcaattgatacttctatttatttcttct |
54074546 |
T |
|
| Q |
211 |
gtttgcagaagcggaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgata |
310 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074547 |
gtttgcagaagctgaataacacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgat- |
54074645 |
T |
|
| Q |
311 |
aaaatcgataatgttgctggcctaatatggaatggtatcttgtactt |
357 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
54074646 |
aaaatagatagtgttgttggcctaatatggaatggtatcttgtactt |
54074692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 256 - 442
Target Start/End: Original strand, 54074693 - 54074878
Alignment:
| Q |
256 |
tgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaaatcgataatgttgctggcctaatatggaatggtatcttgtac |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||| |
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| T |
54074693 |
tgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaa-tagatagtgttgttggcctaatatggaatggtatcttgtac |
54074791 |
T |
|
| Q |
356 |
ttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctctgctgctcc |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54074792 |
ttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctctgctgctcc |
54074878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 25649701 - 25649556
Alignment:
| Q |
17 |
gaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattatgc-atctgtttggtatttttgtttctctattttatat |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | | ||||||||||||| |||||||||||||| || |||||||||| ||||||||||||||||| || |
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| T |
25649701 |
gaaagagtttgttgcgcatattgtgtacattggatgattttgaataaattatcattctattatgcgatatgtttggtatctttgtttctctattttacat |
25649602 |
T |
|
| Q |
116 |
catactcctcaaactgt---attgtctttgataattatagaactatt |
159 |
Q |
| |
|
|||||||||||||| | ||||||| |||||||||||||||||| |
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|
| T |
25649601 |
gatactcctcaaactattttattgtcta-gataattatagaactatt |
25649556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 43 - 131
Target Start/End: Original strand, 19541663 - 19541751
Alignment:
| Q |
43 |
acattgaaagtttttgaataaattgtcattctattatgcatctgtttggtatttttgtttctctattttatatcatactcctcaaactg |
131 |
Q |
| |
|
|||||||||| |||| ||||| |||||||| |||| ||||||| ||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
19541663 |
acattgaaagattttaaataacttgtcattgtattgtgcatctcattggtatctttgtttctctattttatatgatactcctcaaactg |
19541751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 54074693 - 54074725
Alignment:
| Q |
210 |
tgtttgcagaagcggaatagcacaagagaatca |
242 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
54074693 |
tgtttgcagaagctgaatagcacaagagaatca |
54074725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 279
Target Start/End: Original strand, 21134699 - 21134968
Alignment:
| Q |
11 |
cacagagaaagagtttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattctattatgcatctgtttggtatttttgtttctctattt |
110 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
21134699 |
cacagagaaagagcttgttgcacatattgtgtacattgaaagtttttgaataaattgtcattatattgtgcatctgtttggtatttttgtttctctattt |
21134798 |
T |
|
| Q |
111 |
tatatcatactcctcaaactgtattgtctttgataattatagaactattacaacttacactttgctaaaaattcaattgatacttctattt-atttcttc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
21134799 |
tatatcatactcctcaaactgtattgtctttgataattatagaactattacaacttaccctttgctaaaaattcaattgatacttctatttaatttcttc |
21134898 |
T |
|
| Q |
210 |
tgtttgcagaagcggaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
279 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21134899 |
tgtttgcagaagctgaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
21134968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 21134898 - 21134931
Alignment:
| Q |
255 |
ctgtttgcagaagctgaatagcacaagagaatca |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
21134898 |
ctgtttgcagaagctgaatagcacaagagaatca |
21134931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 322 - 442
Target Start/End: Complemental strand, 23559926 - 23559806
Alignment:
| Q |
322 |
tgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgt |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23559926 |
tgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgttgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgt |
23559827 |
T |
|
| Q |
422 |
ttgtgttgtctctgctgctcc |
442 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23559826 |
ttgtgttgtctctgctgctcc |
23559806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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