View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0324_low_2 (Length: 456)
Name: NF0324_low_2
Description: NF0324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0324_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 427
Target Start/End: Original strand, 7242116 - 7242531
Alignment:
| Q |
12 |
agctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaacgtctgaacta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7242116 |
agctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaacgtctgaacta |
7242215 |
T |
|
| Q |
112 |
atccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaatgacattagcctccacggtgtcttttctgtgcttctttacggcgg |
211 |
Q |
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| T |
7242216 |
atccacgtcctagtcgttgtccttgtgattctgttatccaaaaacctcggtacaatgacattagcctccacggtgtcttttctgtgcttctttacggcgg |
7242315 |
T |
|
| Q |
212 |
cattaataggtccgcaaagattctttatactttgaagaatggaatttgaacttgatctcagcatctgaaaactatgcattcctgactcagtaatagacca |
311 |
Q |
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| T |
7242316 |
cattaataggtctgcaaagattctttatactttgaagaatggaatttgaacttgatctcagcatccgaaaactatgcattcctgactcagtaatagacca |
7242415 |
T |
|
| Q |
312 |
tgtggcttggtgctgccactcaagctcatgactcctgctgaaaatccgcgtcccttcaatcaagagtatgattgtgatgaaccaaaagtctgttttgtct |
411 |
Q |
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| T |
7242416 |
tgtggcttggtgctgccactcaagctcatgactcctgctgaaaatccgtgtcccttcaatcaagagtatgattgtgatgaaccaaaagtctgttttgtct |
7242515 |
T |
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| Q |
412 |
aaggtaatggcgaaac |
427 |
Q |
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| T |
7242516 |
aaggtaatggcgaaac |
7242531 |
T |
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Back To:
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 48730951 - 48730825
Alignment:
| Q |
10 |
ctagctgttgcagaaagaagctgaagccaatacagaaccttgctgatatgccctgaaatgaaaaaccatttagcatatggtaaaagtggaacgtctgaac |
109 |
Q |
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|||||||||||||||| ||| ||||||||||| |||| | || | ||||| | ||| ||||||||||||||||| ||||| | |||||| ||||| | |
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| T |
48730951 |
ctagctgttgcagaaataagttgaagccaatagagaattctacttacatgccttaaaagaaaaaaccatttagcataaggtaataatggaacttctgagc |
48730852 |
T |
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| Q |
110 |
taatccacgtcctagtcgttgtccttg |
136 |
Q |
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||| |||| ||||||| | |||||||| |
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| T |
48730851 |
taacccacatcctagttggtgtccttg |
48730825 |
T |
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