View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0324_low_4 (Length: 252)

Name: NF0324_low_4
Description: NF0324
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0324_low_4
NF0324_low_4
[»] chr3 (2 HSPs)
chr3 (147-241)||(39864366-39864460)
chr3 (1-90)||(39864517-39864606)
[»] chr5 (2 HSPs)
chr5 (1-61)||(36341317-36341377)
chr5 (147-241)||(36341117-36341210)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 39864460 - 39864366
Alignment:
Q  147 caaaactttccattatttgttctctactatttgtttatcaatggaaatgaaaacaggaaacaccagaaggaaacaggcccttaatttctcttcat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39864460 caaaactttccattatttgttctctactatttgtttatcaatggaaatgaaaacaggaaacaccagaaggaaacaggcccttaatttctcttcat 39864366  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 39864606 - 39864517
Alignment:
Q  1 agtagatggatgatataattgacctatggttaggaatttttctttttgattgtgatagagaataaatttccagaattactgaaaacaatg 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  39864606 agtagatggatgatataattgacctatggttaggaatttttctttttaattgtgatagagaataaatttccagaactactgaaaacaatg 39864517  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 36341377 - 36341317
Alignment:
Q  1 agtagatggatgatataattgacctatggttaggaatttttctttttgattgtgatagaga 61  Q
    |||| |||||||||||||||||| | ||||||||||||||||||||| |||||||||||||    
T  36341377 agtaaatggatgatataattgacatttggttaggaatttttctttttaattgtgatagaga 36341317  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 36341210 - 36341117
Alignment:
Q  147 caaaactttccattatttgttctctactatttgtttatcaatggaaatgaaaacaggaaacaccagaaggaaacaggcccttaatttctcttcat 241  Q
    |||||| || |||||| | ||||||| ||||| | || ||||||||||||||||||||||||| ||||| ||| || ||||| ||||||||||||    
T  36341210 caaaaccttacattatgtattctctaatatttatataccaatggaaatgaaaacaggaaacacaagaagtaaaaagaccctt-atttctcttcat 36341117  T

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