View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0325-Insertion-1 (Length: 639)

Name: NF0325-Insertion-1
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0325-Insertion-1
NF0325-Insertion-1
[»] chr3 (1 HSPs)
chr3 (7-634)||(49888659-49889278)


Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 49889278 - 49888659
Alignment:
Q  7 agcgggttcaccagagttcacacattcttgcatcgaaagcgcggtttctgtcataacatgttcacttatgttgttgggcatacaatgttcagttggttca 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  49889278 agcgagttcaccagagttcacacattcttgcatcgaaagcgcggtttctgtcataacatgttcacttatgttgttggacatacaatgttcagttggttca 49889179  T
Q  107 tcaaccaaagttactacagcaatggtgtcatttgactctaccatctttatggtagtcaattcttcagctaccttctctttaccatcctcttgtgctgatg 206  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49889178 tcaaccaaagttactgcagcaatggtgtcatttgactctaccatctttatggtagtcaattcttcagctaccttctctttaccatcctcttgtgctgatg 49889079  T
Q  207 aaacttcaatggagacgtctgaagttagttttgtgtttttcttctggtaaactcctttggcctgtaaaatggataactaatcggcattaacaatgacggc 306  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49889078 aaacttcaatggagacatctgaagttagttttgtgtttttcttctggtaaactcctttggcctgtaaaatggataactaatcggcattaacaatgacagc 49888979  T
Q  307 aactaaagtcttctactatgtaacaattatgtcatagtgttctattgtgaatcatgtctaaaaacaaactatttaaatcggttatgagtcatttgcaata 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  49888978 aactaaagtcttctactatgtaacaattatgtcatagtgttctattgtgaatcatgtctaaaaacaaactatttaaatcggttatgagtcatttgtaata 49888879  T
Q  407 gttctctttacctcttactattggacaatctttcgtctaatctactctctttactagggtctctacttcgtacttccacacatgtctctaccacctaaga 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  49888878 gttctctttacctcttactattggacaatctttcgtctaatctactctctttactagggtctcta-------cttccacacatgtctctaccacctaaga 49888786  T
Q  507 tgagattctacaatttatataaattgagagcattttgtatctttcatataacattgcaagtcttgtagctgtgtaatgaaatttttatgtttttgggtac 606  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  49888785 tgagattctacaatttatataaattgagagcattttgcacctttcatataacattgcaagtcttgtagctgtgtaatgaaaattttatg-ttttgggtac 49888687  T
Q  607 aaaacccctctagcaatttcagtatgtt 634  Q
    ||||||||||||||||||||||||||||    
T  49888686 aaaacccctctagcaatttcagtatgtt 49888659  T

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