View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0325-Insertion-1 (Length: 639)
Name: NF0325-Insertion-1
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0325-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 558; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 7 - 634
Target Start/End: Complemental strand, 49889278 - 49888659
Alignment:
| Q |
7 |
agcgggttcaccagagttcacacattcttgcatcgaaagcgcggtttctgtcataacatgttcacttatgttgttgggcatacaatgttcagttggttca |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49889278 |
agcgagttcaccagagttcacacattcttgcatcgaaagcgcggtttctgtcataacatgttcacttatgttgttggacatacaatgttcagttggttca |
49889179 |
T |
|
| Q |
107 |
tcaaccaaagttactacagcaatggtgtcatttgactctaccatctttatggtagtcaattcttcagctaccttctctttaccatcctcttgtgctgatg |
206 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49889178 |
tcaaccaaagttactgcagcaatggtgtcatttgactctaccatctttatggtagtcaattcttcagctaccttctctttaccatcctcttgtgctgatg |
49889079 |
T |
|
| Q |
207 |
aaacttcaatggagacgtctgaagttagttttgtgtttttcttctggtaaactcctttggcctgtaaaatggataactaatcggcattaacaatgacggc |
306 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
49889078 |
aaacttcaatggagacatctgaagttagttttgtgtttttcttctggtaaactcctttggcctgtaaaatggataactaatcggcattaacaatgacagc |
49888979 |
T |
|
| Q |
307 |
aactaaagtcttctactatgtaacaattatgtcatagtgttctattgtgaatcatgtctaaaaacaaactatttaaatcggttatgagtcatttgcaata |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49888978 |
aactaaagtcttctactatgtaacaattatgtcatagtgttctattgtgaatcatgtctaaaaacaaactatttaaatcggttatgagtcatttgtaata |
49888879 |
T |
|
| Q |
407 |
gttctctttacctcttactattggacaatctttcgtctaatctactctctttactagggtctctacttcgtacttccacacatgtctctaccacctaaga |
506 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49888878 |
gttctctttacctcttactattggacaatctttcgtctaatctactctctttactagggtctcta-------cttccacacatgtctctaccacctaaga |
49888786 |
T |
|
| Q |
507 |
tgagattctacaatttatataaattgagagcattttgtatctttcatataacattgcaagtcttgtagctgtgtaatgaaatttttatgtttttgggtac |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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|
| T |
49888785 |
tgagattctacaatttatataaattgagagcattttgcacctttcatataacattgcaagtcttgtagctgtgtaatgaaaattttatg-ttttgggtac |
49888687 |
T |
|
| Q |
607 |
aaaacccctctagcaatttcagtatgtt |
634 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
49888686 |
aaaacccctctagcaatttcagtatgtt |
49888659 |
T |
|
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