View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0325-Insertion-3 (Length: 185)
Name: NF0325-Insertion-3
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0325-Insertion-3
[» ] chr4 (2 HSPs)
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 3634641 - 3634463
Alignment:
Q
7
acctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggttcttgagatagcacactctt
106
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3634641
acctggaaccccatctagataaaaagtggccaatgtataaataagtgatgagaaaagaagatgaagaatgaaattttggttcttgagatagcacactctt
3634542
T
Q
107
tctcaaaacttctttttcatccattttatcatatgaacaagagtgtcctaacccttactagtattgactatttagtatc
185
Q
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
3634541
tctcaaaacttctttttcatacattttatcatatgaacaagagtgtcctaacccttactagtattgactatttagtatc
3634463
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 3644513 - 3644465
Alignment:
Q
7
acctggaaccccatctagataaaaagtggccaatgtataaataagtgat
55
Q
|||||||||||||||||| ||||||||| |||| |||||||||||||||
T
3644513
acctggaaccccatctagctaaaaagtgaccaaagtataaataagtgat
3644465
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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