View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0325_high_2 (Length: 312)

Name: NF0325_high_2
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0325_high_2
NF0325_high_2
[»] chr8 (6 HSPs)
chr8 (40-179)||(15333369-15333508)
chr8 (40-179)||(15513738-15513877)
chr8 (40-179)||(15422465-15422604)
chr8 (39-179)||(14980419-14980559)
chr8 (79-179)||(18802347-18802447)
chr8 (187-304)||(1734706-1734834)
[»] chr6 (3 HSPs)
chr6 (40-179)||(14962937-14963076)
chr6 (119-179)||(17006621-17006681)
chr6 (265-303)||(23495954-23495992)
[»] chr4 (3 HSPs)
chr4 (39-179)||(35184475-35184615)
chr4 (69-179)||(4103645-4103755)
chr4 (82-126)||(2468924-2468968)
[»] chr5 (2 HSPs)
chr5 (39-179)||(21301636-21301776)
chr5 (82-142)||(5404737-5404797)
[»] chr7 (2 HSPs)
chr7 (39-179)||(48630642-48630780)
chr7 (187-303)||(14324321-14324449)
[»] chr3 (4 HSPs)
chr3 (185-304)||(10791900-10792030)
chr3 (187-303)||(14683758-14683886)
chr3 (187-233)||(7342075-7342121)
chr3 (257-303)||(7342157-7342203)
[»] chr1 (3 HSPs)
chr1 (187-304)||(41369265-41369393)
chr1 (187-255)||(22085857-22085925)
chr1 (265-303)||(22085798-22085836)
[»] scaffold0464 (1 HSPs)
scaffold0464 (39-91)||(3295-3347)
[»] scaffold0101 (4 HSPs)
scaffold0101 (187-255)||(46878-46946)
scaffold0101 (187-255)||(51516-51584)
scaffold0101 (265-303)||(46967-47005)
scaffold0101 (265-303)||(51605-51643)
[»] chr2 (2 HSPs)
chr2 (187-255)||(24950588-24950656)
chr2 (265-303)||(24950527-24950565)
[»] scaffold1701 (1 HSPs)
scaffold1701 (211-303)||(1353-1457)
[»] scaffold0193 (1 HSPs)
scaffold0193 (192-256)||(27373-27437)
[»] scaffold0323 (1 HSPs)
scaffold0323 (187-230)||(4011-4054)
[»] scaffold0051 (2 HSPs)
scaffold0051 (265-303)||(79195-79233)
scaffold0051 (187-233)||(79275-79321)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 15333369 - 15333508
Alignment:
Q  40 acatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgtt 139  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15333369 acattatcactgtattattgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgtt 15333468  T
Q  140 gataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    |||  |||||||||||||||||||||||||||||||||||    
T  15333469 gatgttctgttttatttaattgtttcatgaactgttgtat 15333508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 15513738 - 15513877
Alignment:
Q  40 acatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgtt 139  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15513738 acattatcactgtattattgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgtt 15513837  T
Q  140 gataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    |||  |||||||||||||||||||||||||||||||||||    
T  15513838 gatgttctgttttatttaattgtttcatgaactgttgtat 15513877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 15422465 - 15422604
Alignment:
Q  40 acatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgtt 139  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15422465 acattatcactgtattattgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgtt 15422564  T
Q  140 gataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    |||  | |||||||||||||||||||||||||||||||||    
T  15422565 gatgttatgttttatttaattgtttcatgaactgttgtat 15422604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 14980559 - 14980419
Alignment:
Q  39 gacatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgt 138  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||||||||| || |||||||||||||||||||||||    
T  14980559 gacattatcactgtattattgcctaaagaggtcataacattgaaagcttatgtttcgtttaatttatgaaatgcttcacattatcactgtcaaagtttgt 14980460  T
Q  139 tgataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    ||||  |||||||||| || |||||||||||||||||||||    
T  14980459 tgatgttctgttttatatagttgtttcatgaactgttgtat 14980419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 18802347 - 18802447
Alignment:
Q  79 tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttatttaattgtttcatgaactgttgta 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||    
T  18802347 tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatgttctgttttatttacttgtttcatgaactgttgta 18802446  T
Q  179 t 179  Q
    |    
T  18802447 t 18802447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 187 - 304
Target Start/End: Complemental strand, 1734834 - 1734706
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctct-----------ttttagttacttttactcctt 275  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||           |||||||||||||||||| ||    
T  1734834 tccacgcgatgattgacatctgtccaatatcaaaagctatatatgactctgagtcatacttttgctcttacttcgtttcttttagttacttttactcttt 1734735  T
Q  276 tcaccatccccttcttctaccttacgatc 304  Q
    |||||||||||||||||||| ||||||||    
T  1734734 tcaccatccccttcttctactttacgatc 1734706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 40 - 179
Target Start/End: Original strand, 14962937 - 14963076
Alignment:
Q  40 acatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgtt 139  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  14962937 acattatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatatttgacattatcactgtcaaaatttgtt 14963036  T
Q  140 gataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    |||  ||||||||||||| |||||||||||||||||||||    
T  14963037 gatggtctgttttatttacttgtttcatgaactgttgtat 14963076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 17006621 - 17006681
Alignment:
Q  119 ttatcactgtcaaagtttgttgataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||    
T  17006621 ttatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatgaactgttgtat 17006681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 23495992 - 23495954
Alignment:
Q  265 ttttactcctttcaccatccccttcttctaccttacgat 303  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  23495992 ttttactcttttcaccatctccttcttctaccttacgat 23495954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 35184475 - 35184615
Alignment:
Q  39 gacatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgt 138  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||    
T  35184475 gacattatcactgtattgttgcctaaagaggtcataacattgaaagtttatgttttgtttaatttatgaaatgcttgacattatcacggtcaaagtttgt 35184574  T
Q  139 tgataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    ||||  |||||| |||||| |||||||||||||||||||||    
T  35184575 tgatgttctgttctatttagttgtttcatgaactgttgtat 35184615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 4103645 - 4103755
Alignment:
Q  69 gtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgataatctgttttatttaattgtttcatg 168  Q
    |||||||||||||||||||||||||| |||||||||||||||| || | |||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  4103645 gtcataacattgaaagtttatgttttgtttaatttatgaaatgcttcatattatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatg 4103744  T
Q  169 aactgttgtat 179  Q
    |||||||||||    
T  4103745 aactgttgtat 4103755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 2468924 - 2468968
Alignment:
Q  82 aagtttatgttttatttaatttatgaaatgtttgacattatcact 126  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||    
T  2468924 aagtttatgttttgtttaatttatgaaatgcttgacattatcact 2468968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 39 - 179
Target Start/End: Complemental strand, 21301776 - 21301636
Alignment:
Q  39 gacatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgt 138  Q
    ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||    
T  21301776 gacattatcactgtattattgcctaaagtggtcataacgttgaaagtttatgttttgtttaatttatgaaatgcttgacattatcactatcaaagtttgt 21301677  T
Q  139 tgataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    ||||  ||||||||| ||| |||||||||||||||||||||    
T  21301676 tgatgttctgttttagttagttgtttcatgaactgttgtat 21301636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 5404737 - 5404797
Alignment:
Q  82 aagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgat 142  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||| |||||||||||||    
T  5404737 aagtttatgttttgtttaatttatgaaatgcctgacattatcactgttaaagtttgttgat 5404797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 39 - 179
Target Start/End: Original strand, 48630642 - 48630780
Alignment:
Q  39 gacatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgt 138  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  48630642 gacattatcactgcattattgcctaaagaggtcataacattgaaagttt--gttttgtttaatttatgaaatgcttgacattatcactgtcaaagtttgt 48630739  T
Q  139 tgataatctgttttatttaattgtttcatgaactgttgtat 179  Q
    | ||  ||| ||||||||| |||||||||||||||||||||    
T  48630740 ttatgttctattttatttagttgtttcatgaactgttgtat 48630780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 14324321 - 14324449
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgc------------tctttttagttacttttactcct 274  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||   ||||||||||||| |            ||| |||||||| |||||||| |    
T  14324321 tccatgcgatgattgacatctgttcagtatcaaaagctatatatgaccctgagtcatacttttacttttacttcgtttctctttagttatttttactctt 14324420  T
Q  275 ttcaccatccccttcttctaccttacgat 303  Q
    |||||||||||||||||||||||||||||    
T  14324421 ttcaccatccccttcttctaccttacgat 14324449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 10792030 - 10791900
Alignment:
Q  185 gctccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctct-----------ttttagttacttttactcc 273  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||           ||||||||||||||||||     
T  10792030 gctccacgcgatgattgacatctgtccagtatcaaaagttatatatgactgcgagtcatacttttgctcttactttgctccttttagttacttttactct 10791931  T
Q  274 tttcaccatccccttcttctaccttacgatc 304  Q
    |||||||||||||||||||||||||||||||    
T  10791930 tttcaccatccccttcttctaccttacgatc 10791900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 187 - 303
Target Start/End: Original strand, 14683758 - 14683886
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt------------tttagttacttttactcct 274  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||            |||||| | |||||||  |    
T  14683758 tccatgcgatgattgacatctgtccagtatcaaaagctatatatgaccctgagtcatacttttactcttacttcatttctctttagtcatttttactatt 14683857  T
Q  275 ttcaccatccccttcttctaccttacgat 303  Q
    |||||||||||||||||||||||||||||    
T  14683858 ttcaccatccccttcttctaccttacgat 14683886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 233
Target Start/End: Original strand, 7342075 - 7342121
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 233  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  7342075 tccatgcgatgattgacatctgtccaatatcaaaagctatatatgac 7342121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 7342157 - 7342203
Alignment:
Q  257 ttagttacttttactcctttcaccatccccttcttctaccttacgat 303  Q
    ||||||  |||||||| ||||||||||||||||||||||||| ||||    
T  7342157 ttagtttattttactcttttcaccatccccttcttctaccttgcgat 7342203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 187 - 304
Target Start/End: Original strand, 41369265 - 41369393
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt-----------tttagttacttttactcctt 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||           ||||||||||||||||| ||    
T  41369265 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactatgagtcatacttttgctcttacttcatttcctttagttacttttactcttt 41369364  T
Q  276 tcaccatccccttcttctaccttacgatc 304  Q
    |||||||||||||||||||||||||||||    
T  41369365 tcaccatccccttcttctaccttacgatc 41369393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 22085925 - 22085857
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 255  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
T  22085925 tccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 22085857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 22085836 - 22085798
Alignment:
Q  265 ttttactcctttcaccatccccttcttctaccttacgat 303  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  22085836 ttttactcttttcaccatccccttcttctaacttacgat 22085798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 3295 - 3347
Alignment:
Q  39 gacatcatcactgtattattgcctaaagaggtcataacattgaaagtttatgt 91  Q
    ||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  3295 gacattatcactgtattattgcgtaaagaggtcataacattgaaagtttatgt 3347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 46878 - 46946
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 255  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
T  46878 tccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 46946  T

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Target: scaffold0101; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 51516 - 51584
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 255  Q
    |||| |||||||||||||||||||||  |||||||||||||||||||   ||||||||||||| |||||    
T  51516 tccatgcgatgattgacatctgtccaacatcaaaagctatatatgaccctgagtcatacttttactctt 51584  T

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Target: scaffold0101; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 46967 - 47005
Alignment:
Q  265 ttttactcctttcaccatccccttcttctaccttacgat 303  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  46967 ttttactcttttcaccatccccttcttctaacttacgat 47005  T

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Target: scaffold0101; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Original strand, 51605 - 51643
Alignment:
Q  265 ttttactcctttcaccatccccttcttctaccttacgat 303  Q
    |||||||| ||||||||||||||||||||| ||||||||    
T  51605 ttttactcttttcaccatccccttcttctaacttacgat 51643  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 24950656 - 24950588
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctctt 255  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||   |||||||| |||| |||||    
T  24950656 tccatgcgatgattgacatctgtccaatatcaaaagctatatatgaccctgagtcatatttttactctt 24950588  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 24950565 - 24950527
Alignment:
Q  265 ttttactcctttcaccatccccttcttctaccttacgat 303  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  24950565 ttttactcttttcaccatccccttcttctaccttacgat 24950527  T

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Target: scaffold1701 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1701
Description:

Target: scaffold1701; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 303
Target Start/End: Complemental strand, 1457 - 1353
Alignment:
Q  211 cagtatcaaaagctatatatgactgcgagtcatacttttgctctt------------tttagttacttttactcctttcaccatccccttcttctacctt 298  Q
    |||||||||||||||||||||||   ||||||||||||| |||||            |||||||| |||||||| |||||||||||||||||||||||||    
T  1457 cagtatcaaaagctatatatgaccctgagtcatacttttactcttacttcgtttctctttagttatttttactcttttcaccatccccttcttctacctt 1358  T
Q  299 acgat 303  Q
    |||||    
T  1357 acgat 1353  T

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Target: scaffold0193 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 256
Target Start/End: Original strand, 27373 - 27437
Alignment:
Q  192 gcgatgattgacatctgtccagtatcaaaagctatatatgactgcgagtcatacttttgctcttt 256  Q
    ||||| ||||||||||||| | ||||||| ||||||||||||   ||||||||||||| ||||||    
T  27373 gcgatcattgacatctgtcaaatatcaaaggctatatatgaccttgagtcatacttttactcttt 27437  T

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Target: scaffold0323 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 4054 - 4011
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatat 230  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||    
T  4054 tccatgcgatgattgacatctgtccaatatcaaaggctatatat 4011  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 303
Target Start/End: Complemental strand, 79233 - 79195
Alignment:
Q  265 ttttactcctttcaccatccccttcttctaccttacgat 303  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  79233 ttttactcttttcaccatctccttcttctaccttacgat 79195  T

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Target: scaffold0051; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 233
Target Start/End: Complemental strand, 79321 - 79275
Alignment:
Q  187 tccacgcgatgattgacatctgtccagtatcaaaagctatatatgac 233  Q
    |||| |||||||||||||||||||||  |||||| ||||||||||||    
T  79321 tccatgcgatgattgacatctgtccaacatcaaaggctatatatgac 79275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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