View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0325_high_3 (Length: 279)
Name: NF0325_high_3
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0325_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 1347583 - 1347372
Alignment:
| Q |
15 |
gtgatatgaatatttcctagatgtatacttggttttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctcc |
114 |
Q |
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| T |
1347583 |
gtgatatgaatatttcctagatatatacttggtgttttcttaattttctatacctgctactattggatttgatggtttgaaaagtataggttttgtctcc |
1347484 |
T |
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| Q |
115 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
214 |
Q |
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| T |
1347483 |
ttatacaaatcaatggtccaacaattctagggtacacttaataactacgcgatatatgctttgcttagcatttttcgtaaccacgttgcttgaatagaac |
1347384 |
T |
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| Q |
215 |
aatttgtggctg |
226 |
Q |
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||||||| |||| |
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| T |
1347383 |
aatttgttgctg |
1347372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 8675681 - 8675798
Alignment:
| Q |
81 |
atttgatggtttgaaaagtataggttttgtctccttatacaaatcaat-ggtccaacaattctagggtgcacttaataactacgcgatatatgcattgct |
179 |
Q |
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| T |
8675681 |
atttgacggtttgaacaatacaggcttggtctccttatacaaatcaaacggtcttccaattctagggtgcacttgataactatgcaatatatgttttgct |
8675780 |
T |
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| Q |
180 |
tagcatttttcgtaacca |
197 |
Q |
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| T |
8675781 |
tagcattttctgtaacca |
8675798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 9619327 - 9619439
Alignment:
| Q |
115 |
ttatacaaatcaatggtccaacaattctagggtgcacttaataactacgcgatatatgcattgcttagcatttttcgtaaccacgttggttgaatagaac |
214 |
Q |
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|||||||||| ||||||| |||| ||||||||||||||||||| || || |||| ||||||||||||| ||||||| ||| |||| || || |
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| T |
9619327 |
ttatacaaataaatggtcttctaattatagggtgcacttaataactgtgcaatgtatgttatgcttagcattttctgtaaccaaattgcttgagtaaaat |
9619426 |
T |
|
| Q |
215 |
aatttgtggctgt |
227 |
Q |
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||||||||||||| |
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| T |
9619427 |
aatttgtggctgt |
9619439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 15785105 - 15785176
Alignment:
| Q |
90 |
tttgaaaagtataggttttgtctccttatacaaatcaatggtccaacaattctagggtgcacttaataacta |
161 |
Q |
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|||||| | ||||||||| |||||||||||| ||| ||||||||| |||||||||||||||||| ||||||| |
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| T |
15785105 |
tttgaacaatataggtttggtctccttataccaattaatggtccaccaattctagggtgcacttgataacta |
15785176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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