View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0325_low_11 (Length: 221)
Name: NF0325_low_11
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0325_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 19965463 - 19965565
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
19965463 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaa |
19965562 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
19965563 |
atc |
19965565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 21027533 - 21027431
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21027533 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaa |
21027434 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
21027433 |
atc |
21027431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 626521 - 626623
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
626521 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctattgtctcagaagaaatcttcaccagaattatgatcatcaa |
626620 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
626621 |
atc |
626623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29867997 - 29868099
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29867997 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaa |
29868096 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
29868097 |
atc |
29868099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 33721848 - 33721750
Alignment:
| Q |
5 |
aaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaaatc |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33721848 |
aaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaaatc |
33721750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 20786352 - 20786250
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20786352 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgaccatcaa |
20786253 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
20786252 |
atc |
20786250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 29469709 - 29469811
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29469709 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagagctactttgtttgctgttgtctcagaagaaatcttcaccagaattatgaccatcaa |
29469808 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
29469809 |
atc |
29469811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 28699066 - 28698964
Alignment:
| Q |
1 |
taaaaaatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccagaattatgatcatcaa |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
|
|
| T |
28699066 |
taaataatcacaaggaaaggaaaacaagaaagtcaaaagcaagggctactttgtttgctgctgtctcagaagaaatcttcaccataattataaccatcaa |
28698967 |
T |
|
| Q |
101 |
atc |
103 |
Q |
| |
|
||| |
|
|
| T |
28698966 |
atc |
28698964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 573 times since January 2019
Visitors: 2777