View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0325_low_12 (Length: 215)
Name: NF0325_low_12
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0325_low_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 10299293 - 10299439
Alignment:
| Q |
20 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10299293 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatgtttccattcatgtggca |
10299392 |
T |
|
| Q |
120 |
tggattttttccaccactgctgtggaaacaattagaccttttaattg |
166 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10299393 |
tggattttttccaccactgctgtggaaacaattagaccttttaattg |
10299439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 40204276 - 40204135
Alignment:
| Q |
25 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
124 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||||||| | || | ||| |||||||||||||||||||||||| | ||||||||| ||||||| |
|
|
| T |
40204276 |
gagagccaccatatttgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggat |
40204177 |
T |
|
| Q |
125 |
tttttccaccactgctgtggaaacaattagaccttttaattg |
166 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
40204176 |
cttttccaccacttctatggaaacaatttgacctttcaattg |
40204135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 40208409 - 40208268
Alignment:
| Q |
25 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
124 |
Q |
| |
|
||||||||||| || |||||||| || |||||||||||||| | || | ||| |||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
40208409 |
gagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgcttttcatgtgacatggat |
40208310 |
T |
|
| Q |
125 |
tttttccaccactgctgtggaaacaattagaccttttaattg |
166 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
40208309 |
cttttccaccacttctatggaaacaatttgacctttcaattg |
40208268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 166
Target Start/End: Complemental strand, 40200775 - 40200634
Alignment:
| Q |
25 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
124 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||| | || | || |||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
40200775 |
gagagccaccataattgatcaaaatctggaatttgagagaatataatttgtactgcaccaaatgaaatcatgtaaatattgctgttcatgtgacatggat |
40200676 |
T |
|
| Q |
125 |
tttttccaccactgctgtggaaacaattagaccttttaattg |
166 |
Q |
| |
|
|||||| ||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
40200675 |
cttttcccccacttctatggaaacaatttgacctttcaattg |
40200634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 547 times since January 2019
Visitors: 2776