View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0325_low_4 (Length: 324)
Name: NF0325_low_4
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0325_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 76 - 295
Target Start/End: Original strand, 5356574 - 5356793
Alignment:
| Q |
76 |
ataatactagtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaat |
175 |
Q |
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|||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5356574 |
ataacactggtgattgggagatgcttcatattgtagatatagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaat |
5356673 |
T |
|
| Q |
176 |
gatgcgtgatggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgtcgataacttccatcctatgagtttccaggctctattaccacat |
275 |
Q |
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| T |
5356674 |
gatgcgtgatggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgtcgataacttccatcctatgagtttccaggctatattaccacat |
5356773 |
T |
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| Q |
276 |
ttgaacaaatatcttgcact |
295 |
Q |
| |
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|||||||||||||||||||| |
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| T |
5356774 |
ttgaacaaatatcttgcact |
5356793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 5412575 - 5412774
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
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| T |
5412575 |
gtgattgggagatgcttcatattgttgatctagcctccaataacttcaacggaacaataccagttgccctattaaatagttggaaggcaatgatgcgtga |
5412674 |
T |
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| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgtcgataacttccatcctatgagtttccaggctctattaccacatttgaacaaa |
284 |
Q |
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| T |
5412675 |
tgaaggcgttcttaggaaagaattaggccatttgttttttgacatcgatgataacttccatcctatgagtttcaaggctttgttaccagatttggacaaa |
5412774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 256
Target Start/End: Original strand, 5393126 - 5393297
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
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| T |
5393126 |
gtgactggaagatgcttcatattgttgatctagcctccaataacttgaacggaagaataccagtctccctattaaatagttggaaggcaatgatgcgtga |
5393225 |
T |
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| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgtcgataacttccatcctatgagttt |
256 |
Q |
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| T |
5393226 |
tgaagatgttcttgggacagaattaggccatttgttttttgacattgatgataacttccatcctatgagttt |
5393297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 256
Target Start/End: Complemental strand, 5468209 - 5468038
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
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||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||| | | | | | ||||| ||||||||||||| ||||||||| |
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| T |
5468209 |
gtgattgggagatgcttcatattgttgatctagcctccaataacttgagcggaacaataccggtttctctattaaatagttggaaggcaacgatgcgtga |
5468110 |
T |
|
| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgtcgataacttccatcctatgagttt |
256 |
Q |
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| T |
5468109 |
tgaaggtgttcttggcccagaatttggccatatgtttttcgatctcgatgataactttcatcctgtgagttt |
5468038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 85 - 228
Target Start/End: Original strand, 5502329 - 5502471
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
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|||||||||| |||||||||||||| ||| |||| || |||| || || |||| ||| |||| ||||||||||| |||||||||||||||| |||||| |
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| T |
5502329 |
gtgattgggatatgcttcatattgtcgatctagcatcaaatagctttagtggcatgataccaggaacattgttaaacagttggaaggcaatgaagcgtga |
5502428 |
T |
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| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaaa |
228 |
Q |
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| T |
5502429 |
tgaaggcatgcttgggccagaatttggccatttgt-ttttgaaa |
5502471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 206
Target Start/End: Original strand, 5363310 - 5363431
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
| |
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|||||||| |||||||||||||||| ||| ||| ||||||||| || || |||| ||||||| || | ||||| |||||||| |||||||||||||| |
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| T |
5363310 |
gtgattggaagatgcttcatattgttgatctaggctccaataactttagtggcatgatatcagcatcactcttaaacagttggaaagcaatgatgcgtga |
5363409 |
T |
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| Q |
185 |
tggaggtgtgcttgggccagaa |
206 |
Q |
| |
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|| || |||| ||||||||||| |
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| T |
5363410 |
tgaagatgtgtttgggccagaa |
5363431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 284
Target Start/End: Original strand, 5354463 - 5354662
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
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|||||||| ||||||||||||| | ||| ||||||||||||| || | || ||| ||||| | || | ||||| |||||||| ||||||||||| || |
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| T |
5354463 |
gtgattggaagatgcttcatatcgctgatctagcctccaataacttcggtggaacattatcacctgcactcttaaatagttggaaagcaatgatgcgcga |
5354562 |
T |
|
| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgtcgataacttccatcctatgagtttccaggctctattaccacatttgaacaaa |
284 |
Q |
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| T |
5354563 |
tgaggacgagcttgggccagaattcggccatttgttttttgatattgttgatatctttcatcctatgcgtttcaaggatgtactacaaaatttgaacaaa |
5354662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 5346598 - 5346451
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
| |
|
|||||||| ||||||||||||| ||| |||||| |||||| || | ||||||||||||| | || | ||||| |||||||| |||||||||||||| |
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| T |
5346598 |
gtgattggaagatgcttcatatctctgatctagcctgcaataaattcaccggcacaatatcatctgcactcttaaatagttggaaagcaatgatgcgtga |
5346499 |
T |
|
| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaaattgt |
232 |
Q |
| |
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| || |||||||| |||||| | || |||||| ||||||| |||| |
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| T |
5346498 |
cgaagacgtgcttggtccagaattcggcaatttgttttttgaagttgt |
5346451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 227
Target Start/End: Original strand, 5378808 - 5378950
Alignment:
| Q |
85 |
gtgattgggagatgcttcatattgtagatttagcctccaataatttgagcggcacaatatcaggtacattgttaaaaagttggaaggcaatgatgcgtga |
184 |
Q |
| |
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|||||||| ||||||||||||| | ||| | || | |||||| || |||||||| |||||| | || | ||||| |||||||| |||||||||||||| |
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| T |
5378808 |
gtgattggaagatgcttcatatcattgatctggcatgcaataacttcagcggcacgatatcatctgcactcttaaatagttggaaagcaatgatgcgtga |
5378907 |
T |
|
| Q |
185 |
tggaggtgtgcttgggccagaacttggtcatttgtattttgaa |
227 |
Q |
| |
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| || ||||||||||||||| | || |||||| ||||||| |
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| T |
5378908 |
cgaagacgtgcttgggccagaattcggcaatttgttttttgaa |
5378950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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