View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0325_low_7 (Length: 284)
Name: NF0325_low_7
Description: NF0325
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0325_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 22 - 255
Target Start/End: Complemental strand, 41702304 - 41702072
Alignment:
| Q |
22 |
ctgtttgcagaagctgaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatga |
121 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702304 |
ctgtttgcagaagctgaataacacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatga |
41702205 |
T |
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| Q |
122 |
taaaaatagatagtgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctag |
221 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41702204 |
taaaa-tagatagtgttgttggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctag |
41702106 |
T |
|
| Q |
222 |
tgcatacttgtgtttgtgttgtctctgctgctcc |
255 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41702105 |
tgcatacttgtgtttgtgttgtctctgctgctcc |
41702072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 41702279 - 41702225
Alignment:
| Q |
1 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatca |
55 |
Q |
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| T |
41702279 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatca |
41702225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 54074693 - 54074878
Alignment:
| Q |
69 |
tgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaaatagatagtgttgctggcctaatatggaatggtatcttgtac |
168 |
Q |
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| T |
54074693 |
tgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatgataaaa-tagatagtgttgttggcctaatatggaatggtatcttgtac |
54074791 |
T |
|
| Q |
169 |
ttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctctgctgctcc |
255 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074792 |
ttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttgtgtttgtgttgtctctgctgctcc |
54074878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 54074545 - 54074692
Alignment:
| Q |
22 |
ctgtttgcagaagctgaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatga |
121 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074545 |
ctgtttgcagaagctgaataacacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatcaatgatgctaaagagaaatga |
54074644 |
T |
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| Q |
122 |
taaaaatagatagtgttgctggcctaatatggaatggtatcttgtactt |
170 |
Q |
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| T |
54074645 |
t-aaaatagatagtgttgttggcctaatatggaatggtatcttgtactt |
54074692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 54074570 - 54074624
Alignment:
| Q |
1 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatca |
55 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074570 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcacaagagaatca |
54074624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 55
Target Start/End: Original strand, 54074693 - 54074725
Alignment:
| Q |
23 |
tgtttgcagaagctgaatagcacaagagaatca |
55 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
54074693 |
tgtttgcagaagctgaatagcacaagagaatca |
54074725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 132 - 255
Target Start/End: Complemental strand, 23559929 - 23559806
Alignment:
| Q |
132 |
tagtgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgctgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttg |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23559929 |
tagtgttgctggcctaatatggaatggtatcttgtacttgtgtttgggaaagtgttgtcaaaaacacaatgtaacggtatcatggtctagtgcatacttg |
23559830 |
T |
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| Q |
232 |
tgtttgtgttgtctctgctgctcc |
255 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
23559829 |
tgtttgtgttgtctctgctgctcc |
23559806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 21134898 - 21134968
Alignment:
| Q |
22 |
ctgtttgcagaagctgaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21134898 |
ctgtttgcagaagctgaatagcacaagagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
21134968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21134923 - 21134968
Alignment:
| Q |
1 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
46 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21134923 |
agagaatcagttatcccaaagctgtttgcagaagctgaatagcaca |
21134968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 21134898 - 21134931
Alignment:
| Q |
68 |
ctgtttgcagaagctgaatagcacaagagaatca |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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|
| T |
21134898 |
ctgtttgcagaagctgaatagcacaagagaatca |
21134931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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