View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0326_low_2 (Length: 250)

Name: NF0326_low_2
Description: NF0326
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0326_low_2
NF0326_low_2
[»] chr8 (8 HSPs)
chr8 (1-212)||(1350488-1350699)
chr8 (1-125)||(1361149-1361273)
chr8 (11-85)||(1344085-1344159)
chr8 (11-85)||(1355428-1355502)
chr8 (170-211)||(1344031-1344072)
chr8 (170-211)||(1355515-1355556)
chr8 (97-141)||(1344023-1344067)
chr8 (97-141)||(1355520-1355564)
[»] chr3 (2 HSPs)
chr3 (97-141)||(24618411-24618455)
chr3 (13-85)||(24618473-24618545)
[»] chr2 (1 HSPs)
chr2 (24-79)||(43364441-43364496)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1350699 - 1350488
Alignment:
Q  1 gattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcctg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1350699 gattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcattgggtcctg 1350600  T
Q  101 atcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaatttttgccgttaaggcctgatcaatcttatcatcaaactca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1350599 atcaatctcatcatcaaactcaaccctaggatcatcttctttctccacttgcttgtcaatttttgccgttaaggcctgatcaatcttatcatcaaactca 1350500  T
Q  201 accacatgatcc 212  Q
    ||||||||||||    
T  1350499 accacatgatcc 1350488  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 1361273 - 1361149
Alignment:
Q  1 gattgtcacgatctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtcggtcatcgggtcctg 100  Q
    ||||||||| |||||||||| |||||||||||||||||||   ||| ||||||||||||||||||||||||||||||||| |||| |||||   ||| ||    
T  1361273 gattgtcacaatctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcattaagtcatg 1361174  T
Q  101 atcaatctcatcatcaaactcaacc 125  Q
    |||||||||||||||||||||||||    
T  1361173 atcaatctcatcatcaaactcaacc 1361149  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 1344159 - 1344085
Alignment:
Q  11 atctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 85  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1344159 atctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1344085  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 85
Target Start/End: Original strand, 1355428 - 1355502
Alignment:
Q  11 atctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 85  Q
    |||||||||| |||||||| ||||||||||| |||  |||||||||||||| ||||||||||| ||||| |||||    
T  1355428 atctctaagaatttctttttttctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtc 1355502  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 1344072 - 1344031
Alignment:
Q  170 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 211  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1344072 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1344031  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 1355515 - 1355556
Alignment:
Q  170 taaggcctgatcaatcttatcatcaaactcaaccacatgatc 211  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  1355515 taaggcctgatcaatctcatcatcaaactcaaccacaagatc 1355556  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 1344067 - 1344023
Alignment:
Q  97 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 141  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1344067 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1344023  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 1355520 - 1355564
Alignment:
Q  97 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 141  Q
    |||||||||||||||||||||||||||||  | ||||||||||||    
T  1355520 cctgatcaatctcatcatcaaactcaaccacaagatcatcttctt 1355564  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 24618455 - 24618411
Alignment:
Q  97 cctgatcaatctcatcatcaaactcaaccctaggatcatcttctt 141  Q
    |||||||||||||||||| ||||||||||  ||||||||||||||    
T  24618455 cctgatcaatctcatcattaaactcaaccacaggatcatcttctt 24618411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 24618545 - 24618473
Alignment:
Q  13 ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc 85  Q
    |||||||| ||||| || | ||||||||| |||  || ||||||||||| ||||||||||||||||| |||||    
T  24618545 ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc 24618473  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 43364441 - 43364496
Alignment:
Q  24 tcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttc 79  Q
    |||| ||||||||||| ||| |  |||||||||||||| |||||||||||||||||    
T  43364441 tcttgtattctctcttgcaaggaacaatttaatctgcgggcaaattcttccacttc 43364496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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