View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0327_low_1 (Length: 476)
Name: NF0327_low_1
Description: NF0327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0327_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 22 - 447
Target Start/End: Complemental strand, 34794489 - 34794067
Alignment:
| Q |
22 |
actcactaatgaaactttggttacaccgaaagaagtattcaaattcaatctttgattgaaacgatgtttgtaagagacaaataaacttgatatggcaagt |
121 |
Q |
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| T |
34794489 |
actcactaatgaaactttggttacaccgaaagaaatattcaaattcaatctttgattgaaacgatgttcgtaagagacaaataaacttgatatggcaagt |
34794390 |
T |
|
| Q |
122 |
tgcatgctacttttaagcaatgtttttatttttgtttcactttacaaaccaccaattactttgccaacccaagttttgattttgcaattagactcctcct |
221 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34794389 |
tgcatgctacttttaaacaatgtttttatttttgtttcactttacaaaccgccaattactttgccaacccaagttttgattttgcaattagac---tcct |
34794293 |
T |
|
| Q |
222 |
atcataattattacagtagttgttttctttgacaaaaaagcattggctaatccagatcaccgtgcctaaccaattaaggaagtggtaaactaatcaacct |
321 |
Q |
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||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34794292 |
atcataattattacagtggttgttttgtttgac-aaaaagcattggctaatccagatcaccgtgcctaaccaattaaggaagtggtaaactaatcaacct |
34794194 |
T |
|
| Q |
322 |
ttttataacaaccttttttctttctaaaattctttaggccaacccttgccattgaaaaggtttttattgctttgcacatgacacgtt-agttgatcattg |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34794193 |
ttttataacaaccttttttctttctaaaattctttaggccaacccttgccattgaaaaggtttttattgctttgcacatgacacgttaagttgatcattg |
34794094 |
T |
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| Q |
421 |
gtacccatgcctactggcctatgaatc |
447 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34794093 |
gtacccatgcctactggcctatgaatc |
34794067 |
T |
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