View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0327_low_2 (Length: 475)
Name: NF0327_low_2
Description: NF0327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0327_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 62 - 464
Target Start/End: Original strand, 16176668 - 16177070
Alignment:
| Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16176668 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcatcatgttcatactac |
16176767 |
T |
|
| Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaagatg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16176768 |
aacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaagatg |
16176867 |
T |
|
| Q |
262 |
aatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaactgtgttgatgcctttggtatgattctttgtctttgttcctatgatcg |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16176868 |
aatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaattgtgtcgatgcctttggtatgattctttgtctttgttcctatgatcg |
16176967 |
T |
|
| Q |
362 |
ttgaatttgatcttagaggaaatacgataaatttgtatgatattcatagctatttcaaatgtattctcttcatgattttattcaccaattaattgataga |
461 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
16176968 |
ttgaatttgatcttagaggaaatacaataaatttgtatgatattcatagctatttcaaatgcattctcttcatgattttattcaccaattaattgataga |
16177067 |
T |
|
| Q |
462 |
ata |
464 |
Q |
| |
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||| |
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| T |
16177068 |
ata |
16177070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 62 - 464
Target Start/End: Original strand, 16146315 - 16146717
Alignment:
| Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
| |
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|||||||||||||||||| ||||||| | |||||||| | || ||| | || | ||||| ||| ||| |||||||||||| |||||||||| ||| |
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| T |
16146315 |
cacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttaggatcgtcatgttcattctat |
16146414 |
T |
|
| Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaagatg |
261 |
Q |
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||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
16146415 |
aacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtattgggatgggaatttgcactggtgactgtcaagatg |
16146514 |
T |
|
| Q |
262 |
aatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaactgtgttgatgcctttggtatgattctttgtctttgttcctatgatcg |
361 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||| ||||| |||||| ||||||||||||||||| |
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| T |
16146515 |
attgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttgggaagtgtgttgatgcccttgatatgagtctttgcctttgttcctatgatcg |
16146614 |
T |
|
| Q |
362 |
ttgaatttgatcttagaggaaatacgataaatttgtatgatattcatagctatttcaaatgtattctcttcatgattttattcaccaattaattgataga |
461 |
Q |
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|||| |||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
16146615 |
ttgagtttgatcttaaaggaaatacaataagtatgtatgatattcatagctatttcaaatgtattatcttcatgattttattcatcaattaattgataga |
16146714 |
T |
|
| Q |
462 |
ata |
464 |
Q |
| |
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||| |
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| T |
16146715 |
ata |
16146717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 62 - 459
Target Start/End: Original strand, 16154947 - 16155349
Alignment:
| Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
16154947 |
cacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttcattctac |
16155046 |
T |
|
| Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggatt---aacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaag |
258 |
Q |
| |
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|||||||||||||||| || |||| |||||||||||| ||| | ||||| ||||| ||||| |||||||||||||||||||| || |||||||| | |
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| T |
16155047 |
aacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtgatattgggatgggaatttgcactgatgactgtctaa |
16155146 |
T |
|
| Q |
259 |
atgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaactgtgttgatgcctttggtatgattctttgtctttgttcctatga |
358 |
Q |
| |
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||| ||||||||||||| |||||||||| ||||||||||||| ||| ||||| ||||||| |||||||| |||| || |||| ||||| |||| |
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| T |
16155147 |
gtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgcctttcatatgcttttttgcatttgtaactatct |
16155246 |
T |
|
| Q |
359 |
tcgttgaatttgatcttagaggaaatacgataaatttgtatg--atattcatagctatttcaaatgtattctcttcatgattttattcaccaattaattg |
456 |
Q |
| |
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||||||| |||||||||| ||||||||| |||| | |||| |||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
16155247 |
tcgttgagtttgatcttaaaggaaatacaataagcatatatgatatattcctagcgatttcaaatgtattctcttcgtgattttattcatcaattaattg |
16155346 |
T |
|
| Q |
457 |
ata |
459 |
Q |
| |
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||| |
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| T |
16155347 |
ata |
16155349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 16271107 - 16271248
Alignment:
| Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
| |
|
|||||||||| | ||||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
16271107 |
cacaaaaattataggtagatgtgataaagcaaattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcttcatgttcattctac |
16271206 |
T |
|
| Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggatta |
203 |
Q |
| |
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||||||||||| ||| |||||||| | | |||||||||||| |
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| T |
16271207 |
aacttatgcacctgtgcttttgatcggtctccaccaggatta |
16271248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 16289243 - 16289334
Alignment:
| Q |
94 |
attgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactacaacttatgcacttgtacttttgat |
185 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||| |||| |||||||| |
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| T |
16289243 |
attgtgcagttcattgtcaatcatatgcaaaagatgttgctgttttaggatcatcatgttcattctacgacttatgcatttgtgcttttgat |
16289334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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