View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0327_low_4 (Length: 424)

Name: NF0327_low_4
Description: NF0327
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0327_low_4
NF0327_low_4
[»] chr6 (8 HSPs)
chr6 (29-222)||(29914609-29914802)
chr6 (220-323)||(29915652-29915755)
chr6 (220-323)||(23936523-23936626)
chr6 (220-323)||(34439348-34439451)
chr6 (220-314)||(29927318-29927411)
chr6 (220-305)||(26669056-26669140)
chr6 (220-291)||(12828653-12828723)
chr6 (220-248)||(6992513-6992541)
[»] chr1 (19 HSPs)
chr1 (220-323)||(1430476-1430579)
chr1 (220-323)||(1428976-1429079)
chr1 (220-309)||(84472-84560)
chr1 (220-303)||(43105562-43105644)
chr1 (220-310)||(5317530-5317620)
chr1 (220-304)||(24040983-24041066)
chr1 (220-314)||(43929794-43929887)
chr1 (220-309)||(6332277-6332365)
chr1 (220-309)||(30006240-30006328)
chr1 (220-307)||(11650168-11650254)
chr1 (230-309)||(40060860-40060938)
chr1 (220-322)||(52403586-52403687)
chr1 (220-309)||(10690909-10690997)
chr1 (220-309)||(37437357-37437446)
chr1 (219-285)||(45749477-45749542)
chr1 (220-309)||(28751362-28751450)
chr1 (220-309)||(43755138-43755225)
chr1 (220-309)||(48259817-48259905)
chr1 (220-248)||(44582792-44582820)
[»] chr8 (9 HSPs)
chr8 (220-323)||(27109760-27109863)
chr8 (220-310)||(6839317-6839406)
chr8 (219-315)||(32737874-32737969)
chr8 (220-309)||(7612608-7612695)
chr8 (220-291)||(22601245-22601315)
chr8 (220-309)||(38329009-38329096)
chr8 (220-322)||(2067810-2067911)
chr8 (220-309)||(9022506-9022594)
chr8 (220-248)||(8471369-8471397)
[»] chr5 (10 HSPs)
chr5 (220-323)||(15400282-15400385)
chr5 (220-323)||(31557280-31557383)
chr5 (220-322)||(4967432-4967533)
chr5 (220-322)||(14979992-14980093)
chr5 (220-322)||(31889830-31889931)
chr5 (220-309)||(12167564-12167652)
chr5 (220-309)||(36660536-36660624)
chr5 (219-250)||(32963020-32963051)
chr5 (215-248)||(34919841-34919874)
chr5 (220-309)||(43257814-43257902)
[»] chr3 (20 HSPs)
chr3 (220-309)||(647546-647634)
chr3 (220-322)||(26965449-26965550)
chr3 (220-314)||(38457571-38457664)
chr3 (220-305)||(2567970-2568054)
chr3 (220-303)||(40048985-40049067)
chr3 (220-305)||(1340887-1340971)
chr3 (220-309)||(27483147-27483235)
chr3 (220-323)||(790183-790285)
chr3 (220-307)||(38165617-38165703)
chr3 (220-309)||(44648364-44648453)
chr3 (220-309)||(5244696-5244783)
chr3 (220-308)||(2662447-2662534)
chr3 (220-303)||(45095639-45095723)
chr3 (227-322)||(34059983-34060077)
chr3 (220-322)||(37225536-37225637)
chr3 (220-309)||(31290928-31291015)
chr3 (220-305)||(35239472-35239556)
chr3 (220-309)||(36771530-36771618)
chr3 (220-248)||(83406-83434)
chr3 (227-303)||(53716121-53716196)
[»] chr7 (12 HSPs)
chr7 (220-314)||(34002081-34002175)
chr7 (220-323)||(41905875-41905977)
chr7 (220-309)||(3680877-3680965)
chr7 (220-309)||(17869348-17869436)
chr7 (220-309)||(18886756-18886844)
chr7 (220-301)||(34733420-34733500)
chr7 (220-277)||(40207376-40207432)
chr7 (220-323)||(36447551-36447653)
chr7 (220-291)||(42259521-42259591)
chr7 (220-248)||(6521930-6521958)
chr7 (220-248)||(10684843-10684871)
chr7 (220-248)||(26963592-26963620)
[»] chr4 (17 HSPs)
chr4 (220-306)||(34360112-34360197)
chr4 (220-322)||(56422943-56423044)
chr4 (220-309)||(43421081-43421169)
chr4 (219-310)||(32140942-32141032)
chr4 (220-323)||(52732698-52732800)
chr4 (220-309)||(34096123-34096211)
chr4 (220-310)||(51737278-51737365)
chr4 (220-309)||(44855351-44855439)
chr4 (220-304)||(39671068-39671151)
chr4 (220-291)||(37445767-37445837)
chr4 (220-303)||(51930683-51930765)
chr4 (220-314)||(54512130-54512223)
chr4 (220-309)||(21045240-21045328)
chr4 (220-309)||(36805407-36805495)
chr4 (220-305)||(45520419-45520503)
chr4 (220-248)||(17499732-17499760)
chr4 (220-248)||(54233925-54233953)
[»] chr2 (9 HSPs)
chr2 (220-322)||(40410553-40410654)
chr2 (220-309)||(24775299-24775387)
chr2 (220-309)||(7743511-7743599)
chr2 (220-323)||(4840667-4840769)
chr2 (220-305)||(1298738-1298822)
chr2 (220-305)||(34225860-34225944)
chr2 (220-285)||(1381849-1381913)
chr2 (220-309)||(14378202-14378290)
chr2 (220-309)||(40987236-40987324)
[»] scaffold0072 (1 HSPs)
scaffold0072 (220-305)||(12040-12123)
[»] scaffold0238 (1 HSPs)
scaffold0238 (220-314)||(15989-16081)
[»] scaffold0119 (1 HSPs)
scaffold0119 (220-305)||(1653-1737)
[»] scaffold0580 (2 HSPs)
scaffold0580 (226-322)||(1690-1785)
scaffold0580 (226-322)||(9429-9524)


Alignment Details
Target: chr6 (Bit Score: 182; Significance: 3e-98; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 29914609 - 29914802
Alignment:
Q  29 agaacctgtgtatctttgagaagtctttttgttaacctgtattttttattataaaaggaaccgatctttagatatattagacagataaaggtcattttca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29914609 agaacctgtgtatctttgagaagtctttttgttaacctgtattttttattataaaaggaaccgatctttagatatattagacagataaaggtcattttca 29914708  T
Q  129 actttaagaactttgtttcctggttttagggagagctcgttgactgtagatgtagaagcaaaggtgtccattaattgaaatgtagctattattt 222  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29914709 actttaagaactttgtttcctggtttcagggagagctcgttaactgtagatgtagaagcaaaggtgtccattaattgaaatatagctattattt 29914802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 29915652 - 29915755
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    |||| |||||||||||||||||||||||||  ||| |||||| |||||||||| | |||||||||| ||||||||||||||||| |||||  |||| |||    
T  29915652 tttatgtttgtctttttcttataaagtaaatggcagtttagtaaaagtgttatttctaattattatttcattcaatttcttaatatgtgtgccaacacct 29915751  T
Q  320 aaaa 323  Q
    ||||    
T  29915752 aaaa 29915755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 23936626 - 23936523
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||| ||||||||||||||||||| |||||| ||| ||| |||||||| |||| ||||| |||||| |||||||||| |||||  |||| |||    
T  23936626 tttaaatttgtttttttcttataaagtaaagggcaattcagtaaaaatgttatatctaatgattatttcattccatttcttaatatgtgtcccaacacct 23936527  T
Q  320 aaaa 323  Q
    ||||    
T  23936526 aaaa 23936523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 34439451 - 34439348
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    |||| |||||||||||||||||||| ||||| |||||||| | ||| |||||||| |||| ||||| |||||  |||||||||| | ||| ||||| |||    
T  34439451 tttatgtttgtctttttcttataaaataaagggcaatttaataaaaatgttatatctaatgattatttcatttcatttcttaatttatgtgtcaacacct 34439352  T
Q  320 aaaa 323  Q
    ||||    
T  34439351 aaaa 34439348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 29927318 - 29927411
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaa 314  Q
    ||||||||||||||||||||||||||| |||   |  ||||| |||||||||| | |||| ||||| |||||| |||| ||||||||||| ||||    
T  29927318 tttaagtttgtctttttcttataaagt-aaggatatgttagtaaaagtgttatgtctaatgattatttcattctattttttaatctgtgtgtcaa 29927411  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 26669140 - 26669056
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    ||||| ||||||||||||||||||||| ||| |||||||||| |||  |||||||  ||| ||||| |||||  ||||||||||||    
T  26669140 tttaattttgtctttttcttataaagt-aagggcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatct 26669056  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 12828723 - 12828653
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcatt 291  Q
    |||||| |||||||||||||||||||| ||| ||| |||||| |||||||||| | |||| ||||| |||||    
T  12828723 tttaagcttgtctttttcttataaagt-aagggcagtttagtaaaagtgttatgtctaatgattatttcatt 12828653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 6992513 - 6992541
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  6992513 tttaagtttgtctttttcttataaagtaa 6992541  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 1430579 - 1430476
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |||||||||| ||||| |||||||||||||||||  |||| |||    
T  1430579 tttaagtttgtctttttcttataaagtaaagtgcagtttagtaaaagtgttatatctaattattatttcattaaatttcttaatctgtgtgccaacacct 1430480  T
Q  320 aaaa 323  Q
    ||||    
T  1430479 aaaa 1430476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 1428976 - 1429079
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    |||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |||| ||||| ||||||||||||||||| | ||| ||||| |||    
T  1428976 tttaagtttgtccttttcttataaagtaaagggcagtttagtaaaagtgttatatctaataattatttcattcaatttcttaatatatgtgtcaacacct 1429075  T
Q  320 aaaa 323  Q
    ||||    
T  1429076 aaaa 1429079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 84560 - 84472
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||||||| |  || |||||| |||||||||| | |||| ||||| |||||||||| ||||||||||||    
T  84560 tttaagtttgtctttttcttataaagtaagga-cattttagtaaaagtgttatgtctaatgattatttcattcaattccttaatctgtgt 84472  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 303
Target Start/End: Complemental strand, 43105644 - 43105562
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaat 303  Q
    ||||||||||||||||||||||||| ||| | | |||||||| |||||||||| | |||| ||||| |||||||||||||||||    
T  43105644 tttaagtttgtctttttcttataaaataatg-gtaatttagtaaaagtgttatgtctaatgattatttcattcaatttcttaat 43105562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 5317620 - 5317530
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgta 310  Q
    ||||||||||||||||||||||||| ||| | |||||||||| |||||||||| | |||| ||||| |||||  ||| |||||||| ||||    
T  5317620 tttaagtttgtctttttcttataaaataaggggcaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctatgta 5317530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 24041066 - 24040983
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatc 304  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||||||||| | |||| ||||| |||||| ||| |||||||    
T  24041066 tttaagtttgtctttttcttataaagt-aagggcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatc 24040983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 43929794 - 43929887
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaa 314  Q
    |||||||| |||||||||||||||||||| | | | | |||| |||||||||| | |||| ||||| ||||||||||||||||| ||||| ||||    
T  43929794 tttaagttagtctttttcttataaagtaatg-gaagtatagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtgtgtcaa 43929887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 6332277 - 6332365
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||| ||||||||||||| ||||||  |||| ||| |||||| |||||||||| | |||| ||||| ||||||||||||||||| |||||    
T  6332277 tttatgtttgtctttttcatataaaacaaag-gcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatttgtgt 6332365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 30006240 - 30006328
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||| ||||||||||||||||||| | |||||||||| | |||||||| | |||| ||||| ||||||||||  |||||||||||    
T  30006240 tttaaatttatctttttcttataaagtaa-gagcaatttagtaatagtgttatgtctaatgattatttcattcaattcattaatctgtgt 30006328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 307
Target Start/End: Original strand, 11650168 - 11650254
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgt 307  Q
    |||||||||||||||||||| |||||| ||| ||| |||||| ||| |  ||||| ||||  |||| |||||||||||||||||||||    
T  11650168 tttaagtttgtctttttcttttaaagt-aagggcagtttagtaaaaatactatatctaatggttatttcattcaatttcttaatctgt 11650254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 40060938 - 40060860
Alignment:
Q  230 tctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||| ||| |||||||||| |||||||||| | |||| ||||| |||||  |||||||||| |||||    
T  40060938 tctttttcttataaagt-aagggcaatttagtaaaagtgttatgtctaatcattatttcatttcatttcttaatatgtgt 40060860  T

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Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 52403586 - 52403687
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| |||||||||| |||||||||||| | ||| |||| | | ||||||||||  ||| ||||| |||||| |||||||||||||| | |||| ||||    
T  52403586 tttaattttgtcttttccttataaagtaagg-gcagtttaataacagtgttatatccaatgattatttcattccatttcttaatctgtatgtcaaagcct 52403684  T
Q  320 aaa 322  Q
    |||    
T  52403685 aaa 52403687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 10690997 - 10690909
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||||||||||||||||||||  |||| ||| ||| |||||| ||| |||||||| |||| ||||| |||||  |||||||||| |||||    
T  10690997 tttaagtttgtctttttcttacgaagt-aagtgcagtttagtaaaaatgttatatctaatgattatttcatttcatttcttaatatgtgt 10690909  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 37437446 - 37437357
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagt-taaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||||| ||| ||||||||||  |||||||||| | |||| | ||| |||||  ||| |||||| |||||    
T  37437446 tttaagtttgtctttttcttataaagt-aagggcaatttagtaaaaagtgttatgtctaatgaatatttcatttcattccttaatatgtgt 37437357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Complemental strand, 45749542 - 45749477
Alignment:
Q  219 atttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattat 285  Q
    |||||||||||||||||||||||||||| ||| ||  |||||| |||||||||| | |||| |||||    
T  45749542 atttaagtttgtctttttcttataaagt-aagggcggtttagtaaaagtgttatgtctaatgattat 45749477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 28751450 - 28751362
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||||||||||| |||||||||||||| ||| ||| |||||| ||| |||||| | |||| ||||| | |||  ||| ||||||||||||    
T  28751450 tttaagtttgtccttttcttataaagt-aagggcagtttagtaaaaatgttatgtctaatgattattttatttcattccttaatctgtgt 28751362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 43755138 - 43755225
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||||||||||||||||||||| |||| ||| || ||||||| |||||||| | | |||||||||| |||||| |||   ||||||||||    
T  43755138 tttaagtttgtctttttcttattaagt-aagggcgatttagtaaaagtgtt-tttttaattattatttcattccattctgtaatctgtgt 43755225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 48259905 - 48259817
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||| ||||||||||||||||  ||| ||| |||| | |||||||||| | |||  ||||| |||||| ||| ||||||||||||    
T  48259905 tttaagtttatctttttcttataaag-caagggcagtttaataaaagtgttatgtctaacgattatttcattctattccttaatctgtgt 48259817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 44582820 - 44582792
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  44582820 tttaagtttgtctttttcttataaagtaa 44582792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 27109863 - 27109760
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    |||||||||||| |||||||||||||||||   ||||||||| |||||||||||| |||| ||||| |||||| |||||||||| |||||  |||| |||    
T  27109863 tttaagtttgtccttttcttataaagtaaaagacaatttagtaaaagtgttatatctaatgattatttcattctatttcttaatatgtgtgccaacacct 27109764  T
Q  320 aaaa 323  Q
    ||||    
T  27109763 aaaa 27109760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 6839317 - 6839406
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgta 310  Q
    |||| |||||||||||||||||||||||||| |||||||||| |||||||||| | |||| ||||| |||||| |||| ||||||||||||    
T  6839317 tttatgtttgtctttttcttataaagtaaag-gcaatttagtaaaagtgttatgtctaatgattatttcattccattttttaatctgtgta 6839406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 32737874 - 32737969
Alignment:
Q  219 atttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaac 315  Q
    |||||||||| ||||||||||||||||||||| ||| ||||   |||||||||||| |||| | ||| ||||||||||||||||||||| |||||||    
T  32737874 atttaagtttttctttttcttataaagtaaagggcagtttaacaaaagtgttatatctaatga-tatttcattcaatttcttaatctgtatatcaac 32737969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 7612608 - 7612695
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||||||||||||||||||||| ||| ||| ||||| ||||| |||||||  ||| ||||| |||||| ||||||||||||||||    
T  7612608 tttaattttgtctttttcttataaagt-aagggcagtttag-taaagcgttatatccaatgattatttcattctatttcttaatctgtgt 7612695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 22601245 - 22601315
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcatt 291  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||| ||||| | |||| ||||| |||||    
T  22601245 tttaagtttgtctttttcttataaagtaaag-acaatttagtaaaagagttatgtctaatgattatttcatt 22601315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 38329096 - 38329009
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||  ||||||||||| ||  | |||||| |||||||||| | |||| ||||| |||||| ||| ||||||||||||    
T  38329096 tttaagtttgtcttttgattataaagtaaggc--agtttagtaaaagtgttatgtctaatgattatttcattccattccttaatctgtgt 38329009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 2067810 - 2067911
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| || ||||||| |||||||||||| | ||| |||| | |||| |||||||  ||| ||||| |||||| |||||||||||| ||| |||| ||||    
T  2067810 tttaatttggtcttttccttataaagtaagg-gcagtttaataaaagcgttatatcaaatgattatttcattccatttcttaatctatgtgtcaaagcct 2067908  T
Q  320 aaa 322  Q
    |||    
T  2067909 aaa 2067911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 9022506 - 9022594
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||||||||||||||||| ||||||  || | ||| |||||| |||||||||| | |||| ||||  |||||| |||| |||||||||||    
T  9022506 tttaagtttgtctttttcatataaaacaa-gtgcagtttagtaaaagtgttatgtctaatgattaattcattccattttttaatctgtgt 9022594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 8471369 - 8471397
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  8471369 tttaagtttgtctttttcttataaagtaa 8471397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 15400282 - 15400385
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    |||||||||  |||||||||||||||||||| | | |||||| |||||||||||| |||| ||||| ||||||||||| |||||||||||  |||| |||    
T  15400282 tttaagttttcctttttcttataaagtaaagggaattttagtaaaagtgttatatctaataattatttcattcaattttttaatctgtgtgccaacacct 15400381  T
Q  320 aaaa 323  Q
    ||||    
T  15400382 aaaa 15400385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 31557383 - 31557280
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||||||||||||||||||||||||||||| |   |||| | ||||| |||||| |||| ||||| |||||| |||||||||| ||||||||||| |||    
T  31557383 tttaagtttgtctttttcttataaagtaaagggttgtttactaaaagtattatatttaatgattatttcattctatttcttaatatgtgtatcaacacct 31557284  T
Q  320 aaaa 323  Q
    ||||    
T  31557283 aaaa 31557280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 4967533 - 4967432
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||| ||||||||||| | ||| |||||| |||| |||||||  ||| ||||| |||||| |||||||||||||||| |||| ||||    
T  4967533 tttaattttgtcttttttttataaagtaagg-gcagtttagtaaaagcgttatatccaatgattatttcattccatttcttaatctgtgtgtcaaagcct 4967435  T
Q  320 aaa 322  Q
    |||    
T  4967434 aaa 4967432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 14980093 - 14979992
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||||| | ||| ||| || ||||||||||||  ||| ||||| |||||| ||||||||||||||||  ||| ||||    
T  14980093 tttaattttgtctttttcttataaagtaagg-gcagtttggtaaaagtgttatatccaatgattatttcattccatttcttaatctgtgtgccaaagcct 14979995  T
Q  320 aaa 322  Q
    |||    
T  14979994 aaa 14979992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 31889830 - 31889931
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||||| | ||| |||||| |||  |||||||  ||| ||||| |||||| |||||||||||||||| |||| ||||    
T  31889830 tttaattttgtctttttcttataaagtaagg-gcagtttagtgaaaacgttatattcaataattatttcattccatttcttaatctgtgtgtcaaagcct 31889928  T
Q  320 aaa 322  Q
    |||    
T  31889929 aaa 31889931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 12167652 - 12167564
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||||||||| | |||||||||||||||| | ||| |||||| |||||||| | | |||| ||||| ||||||||||||||||| |||||    
T  12167652 tttaagtttgaccttttcttataaagtaagg-gcagtttagtaaaagtgttttgtctaatgattatttcattcaatttcttaatttgtgt 12167564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 36660536 - 36660624
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||||| |||  || |||||| |||||||||| | |||| ||||| |||||  ||| ||||||||||||    
T  36660536 tttaagtttgtctttttcttataaagt-aaggacattttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 36660624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 250
Target Start/End: Complemental strand, 32963051 - 32963020
Alignment:
Q  219 atttaagtttgtctttttcttataaagtaaag 250  Q
    ||||||||||||||||||||||||||||||||    
T  32963051 atttaagtttgtctttttcttataaagtaaag 32963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 34919841 - 34919874
Alignment:
Q  215 tattatttaagtttgtctttttcttataaagtaa 248  Q
    ||||| ||||||||||||||||||||||||||||    
T  34919841 tattaattaagtttgtctttttcttataaagtaa 34919874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 43257902 - 43257814
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||| ||||||||||||| ||| ||| ||||||  ||||||||| | |||| ||||| |||||  |||  |||||||||||    
T  43257902 tttaagtttgtctatttcttataaagt-aagggcagtttagtataagtgttatgtctaatgattatttcatttcattctttaatctgtgt 43257814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 647634 - 647546
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| ||| |||||||| |||| ||||| |||||  ||||||||||||||||    
T  647634 tttaagtttgtctttttcttataaagt-aagggcagtttagtaaaactgttatatctaatgattatttcatttcatttcttaatctgtgt 647546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 26965550 - 26965449
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||||| | ||| |||||| |||| |||||||  ||| ||||| |||||  |||||||||||||||| |||| ||||    
T  26965550 tttaattttgtctttttcttataaagtaagg-gcagtttagtaaaagcgttatatccaatgattatttcattttatttcttaatctgtgtgtcaaagcct 26965452  T
Q  320 aaa 322  Q
    |||    
T  26965451 aaa 26965449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 38457571 - 38457664
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaa 314  Q
    ||||||||| ||||||||| ||||||||| | ||| |||||| |||||||||| | |||| ||||| ||||||||||||||||| ||||| ||||    
T  38457571 tttaagtttatctttttctaataaagtaatg-gcagtttagtaaaagtgttatgtgtaatgattatttcattcaatttcttaatttgtgtctcaa 38457664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 2568054 - 2567970
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    ||||||||||||||||||||||||||| |||  || ||| || |||||||||||| |||| ||||| |||||||||| ||||||||    
T  2568054 tttaagtttgtctttttcttataaagt-aaggacatttttgtaaaagtgttatatctaatgattatttcattcaattccttaatct 2567970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 40048985 - 40049067
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaat 303  Q
    ||||| ||||||||||||||||||||||||| |||||||| | |||||||||| | |||| ||||| |||||| ||| ||||||    
T  40048985 tttaaatttgtctttttcttataaagtaaag-gcaatttaataaaagtgttatgtctaatgattatttcattccattccttaat 40049067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 1340971 - 1340887
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    |||||||||||||||||||||||||||||||  || |||||  |||||||||| | |||||||||| |||||| |||  |||||||    
T  1340971 tttaagtttgtctttttcttataaagtaaag-acactttagaaaaagtgttatgtctaattattatttcattccattctttaatct 1340887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 27483235 - 27483147
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||||| ||| | |||||||| |||||||||| | |||| ||||| |||||  ||| |||||| |||||    
T  27483235 tttaagtttgtctttttcttataaagt-aagggaaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatttgtgt 27483147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 790183 - 790285
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| |||| |||||||||||||||| ||| ||| |||||| |||| |||||||  ||| ||||| |||||  |||||||||| ||||| |||| ||||    
T  790183 tttaattttgactttttcttataaagt-aagggcagtttagtaaaagcgttatattcaatgattatttcattacatttcttaatatgtgtgtcaaagcct 790281  T
Q  320 aaaa 323  Q
    ||||    
T  790282 aaaa 790285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 307
Target Start/End: Complemental strand, 38165703 - 38165617
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgt 307  Q
    ||||||||||||||||||||||||||| |||  || |||||| |||||||||| | |||| ||||| |||||  ||| ||||||||||    
T  38165703 tttaagtttgtctttttcttataaagt-aaggacagtttagtaaaagtgttatgtttaatgattatttcattacattccttaatctgt 38165617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 44648453 - 44648364
Alignment:
Q  220 tttaagtttgtcttttt-cttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||| || ||||||||||| ||| |||||| |||||||||| | |||| ||||| |||||  ||| ||||||||||||    
T  44648453 tttaagtttgtcttttttctcataaagtaaag-gcagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 44648364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 5244696 - 5244783
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||| |||||||||||| |||||| | | |||| | |||||||||| | |||| ||||| ||||||||||||||||| |||||    
T  5244696 tttaagtttgtttttttcttataa-gtaaagag-actttaataaaagtgttatgtctaatgattatttcattcaatttcttaatatgtgt 5244783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 308
Target Start/End: Complemental strand, 2662534 - 2662447
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtg 308  Q
    ||||| ||||||||||||||||||| | ||| |||||||||| |||||||||| | |||| ||||| |||||  |||  ||||||||||    
T  2662534 tttaaatttgtctttttcttataaaat-aagggcaatttagtaaaagtgttatgtctaatgattatttcatttgattctttaatctgtg 2662447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 45095639 - 45095723
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaa-gtgttatatataattattatatcattcaatttcttaat 303  Q
    |||||||||||| |||||||||||||||| | ||| |||||| ||| ||||||| | |||| ||||| |||||| ||| ||||||    
T  45095639 tttaagtttgtccttttcttataaagtaaggggcattttagtaaaatgtgttatgtttaatgattatttcattccattccttaat 45095723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 322
Target Start/End: Original strand, 34059983 - 34060077
Alignment:
Q  227 ttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcctaaa 322  Q
    |||||||||||||||||||||| | | | |||||| |||   ||||||  ||||||||| |||||| ||||||||||||||||  ||| |||||||    
T  34059983 ttgtctttttcttataaagtaagg-gtagtttagtaaaaactttatatccaattattatttcattccatttcttaatctgtgtgccaaagcctaaa 34060077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 37225637 - 37225536
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||| |||  || |||||| ||||| ||||||  ||| ||||| |||||  |||||||||||| | | |||| ||||    
T  37225637 tttaattttgtctttttcttataaagt-aaggacagtttagtaaaagtattatatccaatgattatttcattgtatttcttaatctatatgtcaaagcct 37225539  T
Q  320 aaa 322  Q
    |||    
T  37225538 aaa 37225536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 31291015 - 31290928
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||| ||||||||| ||||| ||||| ||| |||||| |||||||||| | |||| ||||| |||||  ||| ||||||||||||    
T  31291015 tttaagttt-tctttttctaataaaataaag-gcagtttagtaaaagtgttatgtctaataattatttcatttcattccttaatctgtgt 31290928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 35239472 - 35239556
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    ||||||||||||||||||||||||||| |||  || |||||| ||| ||||||   |||| ||||| | ||||||||| |||||||    
T  35239472 tttaagtttgtctttttcttataaagt-aaggacagtttagtaaaaatgttatgcctaatgattattttattcaattttttaatct 35239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 36771618 - 36771530
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||| | ||| ||| |||||| ||| | |||| | |||| ||||| |||||  |||||||||| |||||    
T  36771618 tttaagtttgtctttttcttataaaat-aagagcagtttagtaaaaatattatgtctaataattatttcattatatttcttaatatgtgt 36771530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 83406 - 83434
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  83406 tttaagtttgtctttttcttataaagtaa 83434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 303
Target Start/End: Original strand, 53716121 - 53716196
Alignment:
Q  227 ttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaat 303  Q
    |||||||||||||||||||| ||| ||| |||||| |||| |||||||  ||| ||||| |||||  ||||||||||    
T  53716121 ttgtctttttcttataaagt-aagagcagtttagtaaaagcgttatatccaatgattatttcatttcatttcttaat 53716196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 34002175 - 34002081
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaa 314  Q
    ||||| ||||||||||||||||||||||||| ||| |||||  || |||||||||  ||| ||||| |||||  |||||||||||||||| ||||    
T  34002175 tttaattttgtctttttcttataaagtaaagtgcagtttagcaaaggtgttatatccaatgattatttcatttcatttcttaatctgtgtgtcaa 34002081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 41905977 - 41905875
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||| |||| |||||||  ||| ||||| ||| |  |||||||||||||||| |||| ||||    
T  41905977 tttaattttgtctttttcttataaagt-aagggcagtttagtaaaagcgttatatccaatgattatttcagttcatttcttaatctgtgtgtcaaagcct 41905879  T
Q  320 aaaa 323  Q
    ||||    
T  41905878 aaaa 41905875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 3680965 - 3680877
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||| ||||| |||| | |||| ||||| |||||| |||| |||||||||||    
T  3680965 tttaaatttgtctttttcttataaagt-aagagcagtttagtaaaagttttatgtctaatgattatttcattccattttttaatctgtgt 3680877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 17869348 - 17869436
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||| |||||||||||||||||||  ||||||| | |||||||||| | |||| ||||| |||||  ||| ||||||||||||    
T  17869348 tttaagtttgtatttttcttataaagtaaag-acaatttaataaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 17869436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 18886756 - 18886844
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| |||||||||| |||||||||| ||| ||| |||||| |||| ||||||| |||| ||||| |||||| |||||||| |||||||    
T  18886756 tttaattttgtcttttccttataaagt-aagggcagtttagtaaaagcgttatatctaatgattatttcattccatttcttagtctgtgt 18886844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 34733420 - 34733500
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttctta 301  Q
    ||||||||||||||||||||||||||| ||| | | |||||| |||||||||| | |||| ||||| |||||  ||||||||    
T  34733420 tttaagtttgtctttttcttataaagt-aagggtagtttagtaaaagtgttatgtctaatgattatttcatttcatttctta 34733500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 277
Target Start/End: Complemental strand, 40207432 - 40207376
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatata 277  Q
    |||||||||||| |||||||||||||| ||| ||| |||||| |||||||||||||||    
T  40207432 tttaagtttgtcattttcttataaagt-aagggcagtttagtaaaagtgttatatata 40207376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 36447653 - 36447551
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||| |||||||||||||||||||||  || |||| | |||| |||||||  | | ||||| |||||| |||||||||||||| || ||| ||||    
T  36447653 tttaattttatctttttcttataaagtaaaga-cagtttaataaaagagttatatccagtaattatttcattccatttcttaatctgtataccaaagcct 36447555  T
Q  320 aaaa 323  Q
    ||||    
T  36447554 aaaa 36447551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 42259591 - 42259521
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcatt 291  Q
    |||||| |||||||||||||||||||| ||| ||| |||||| |||||||||| | |||| ||||| |||||    
T  42259591 tttaagcttgtctttttcttataaagt-aagggcattttagtaaaagtgttatgtctaataattatctcatt 42259521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 6521930 - 6521958
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  6521930 tttaagtttgtctttttcttataaagtaa 6521958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 10684871 - 10684843
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  10684871 tttaagtttgtctttttcttataaagtaa 10684843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 26963592 - 26963620
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  26963592 tttaagtttgtctttttcttataaagtaa 26963620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 34360112 - 34360197
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctg 306  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||||||||||| |||| ||||| |||||  ||| |||||||||    
T  34360112 tttaagtttgtctttttcttataaagt-aagggcagtttagtaaaagtgttatatctaatgattatttcatttcattccttaatctg 34360197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 56423044 - 56422943
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| || ||||||||||||||||||||||  || |||||| |||| |||||||  ||| ||||| |||||| |||||||||||||||| |||| ||||    
T  56423044 tttaatttcgtctttttcttataaagtaaaga-cagtttagtaaaagcgttatatccaatgattatttcattcgatttcttaatctgtgtgtcaaagcct 56422946  T
Q  320 aaa 322  Q
    |||    
T  56422945 aaa 56422943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 43421169 - 43421081
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||||||||||||||||||||| ||| |||||||||| ||||| ||||||  ||| ||||| |||||| |||||||||| |||||    
T  43421169 tttaattttgtctttttcttataaagt-aagagcaatttagtaaaagtattatatccaatgattatttcattccatttcttaatttgtgt 43421081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 32141032 - 32140942
Alignment:
Q  219 atttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgta 310  Q
    ||||| |||||||||||  ||||||||||  | ||| |||||| |||||||||| | |||| ||||| ||||||||||||||||||||||||    
T  32141032 atttatgtttgtcttttgtttataaagtaggg-gcagtttagtaaaagtgttatgtctaatgattatttcattcaatttcttaatctgtgta 32140942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 52732698 - 52732800
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| |||||||||| |||||||||||| | ||| |||||| ||||||||||||  ||| ||||| |||||| |||| ||||||| ||| |||| ||||    
T  52732698 tttaattttgtcttttccttataaagtaagg-gcagtttagtaaaagtgttatatccaatgattatttcattccattttttaatctatgtgtcaaagcct 52732796  T
Q  320 aaaa 323  Q
    ||||    
T  52732797 aaaa 52732800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 34096123 - 34096211
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||||||||||||||||||| ||| |||||||||| |||||||||  | |||| ||||| |||||  |||| ||||| |||||    
T  34096123 tttaagtttgtctttttcttataaagt-aagggcaatttagtaaaagtgttaagtctaatgattatttcatttcattttttaatttgtgt 34096211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 51737365 - 51737278
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgta 310  Q
    ||||||||||||||||||  ||||||| ||| | |||||||| |||||||||| | |||||||||| |||||| ||| |||||| ||||||    
T  51737365 tttaagtttgtctttttc--ataaagt-aagggtaatttagtaaaagtgttatgtctaattattatttcattctattccttaatttgtgta 51737278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 44855351 - 44855439
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| |||||||||| |||||||||| ||| ||| |||||| |||| |||||||  ||| ||||| |||||| |||||||||| |||||    
T  44855351 tttaattttgtcttttccttataaagt-aagggcagtttagtaaaagcgttatattcaatgattatttcattctatttcttaatttgtgt 44855439  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 304
Target Start/End: Complemental strand, 39671151 - 39671068
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatc 304  Q
    ||||||||||| ||||||||||||||||||| | | |||||| || ||||||| | |||| || || |||||| |||||||||||    
T  39671151 tttaagtttgtttttttcttataaagtaaag-gtagtttagtaaatgtgttatgtctaatgataatttcattccatttcttaatc 39671068  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 37445767 - 37445837
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcatt 291  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||| |||||||||| | |||| ||||| |||||    
T  37445767 tttaaatttgtctttttcttataaagt-aagggcagtttagtaaaagtgttatgtctaatgattatttcatt 37445837  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 303
Target Start/End: Original strand, 51930683 - 51930765
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaat 303  Q
    ||||| |||||| |||||||||||||| ||| ||| |||||| |||| |||||||  ||||||||| |||||| ||||| ||||    
T  51930683 tttaattttgtcattttcttataaagt-aagggcagtttagtaaaagcgttatatccaattattatttcattccatttcataat 51930765  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 314
Target Start/End: Original strand, 54512130 - 54512223
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaa 314  Q
    ||||| |||||| |||||||||||||| ||| ||| |||||| |||  |||||||  ||||||||| |||||  |||||||||| ||||| ||||    
T  54512130 tttaattttgtcattttcttataaagt-aagagcagtttagtaaaaacgttatatccaattattatttcatttcatttcttaatatgtgtgtcaa 54512223  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 21045240 - 21045328
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||||||||||||||||||||| ||| ||| |||| | ||||  ||||||  ||| ||||| |||||| ||| ||||||||||||    
T  21045240 tttaattttgtctttttcttataaagt-aagggcagtttaataaaagccttatatccaatgattatttcattccattccttaatctgtgt 21045328  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 36805495 - 36805407
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    |||||||||||||||||| |||||| ||| |  || |||||| |||||||||| | |||| ||||| |||||  ||| ||||||||||||    
T  36805495 tttaagtttgtctttttcatataaactaagga-cagtttagtaaaagtgttatgtctaatgattatttcatttcattccttaatctgtgt 36805407  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 45520503 - 45520419
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    |||||||||||||| ||||||||| |||| | |||  ||||| |||||||||| | |||| ||||| | |||| ||||||||||||    
T  45520503 tttaagtttgtcttattcttataatgtaagg-gcagcttagtaaaagtgttatgtctaatgattattttattccatttcttaatct 45520419  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 17499760 - 17499732
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  17499760 tttaagtttgtctttttcttataaagtaa 17499732  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 248
Target Start/End: Original strand, 54233925 - 54233953
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaa 248  Q
    |||||||||||||||||||||||||||||    
T  54233925 tttaagtttgtctttttcttataaagtaa 54233953  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 40410553 - 40410654
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||||| | ||| |||| | |||| |||||||  ||| ||||| |||||| ||||||||||||||||  ||||||||    
T  40410553 tttaattttgtctttttcttataaagtaagg-gcagtttaataaaagcgttatatccaatgattatgtcattccatttcttaatctgtgtgacaacgcct 40410651  T
Q  320 aaa 322  Q
    |||    
T  40410652 aaa 40410654  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 24775299 - 24775387
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||||||||| ||||||||||||||||| | ||| |||||| |||||||||||| |||| ||||| |||||||||  |||||| |||||    
T  24775299 tttaagtttgtttttttcttataaagtaa-gagcattttagtaaaagtgttatatctaatgattatttcattcaataccttaatttgtgt 24775387  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 309
Target Start/End: Original strand, 7743511 - 7743599
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||||||||||||||||||||| ||| |||| ||||| |||||||||||| | || ||||| ||||| ||||  |||||||||||    
T  7743511 tttaaatttgtctttttcttataaagt-aagggcaacttagtaaaagtgttatatctgatgattatttcatttaattctttaatctgtgt 7743599  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 4840769 - 4840667
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcct 319  Q
    ||||| ||||||||||||||||||||| ||| ||| |||||| |||  |||||||  ||| ||||| |||||| |||||||||| |||||  ||| ||||    
T  4840769 tttaattttgtctttttcttataaagt-aagggcagtttagtaaaaacgttatatccaatgattatttcattccatttcttaatatgtgtgccaaagcct 4840671  T
Q  320 aaaa 323  Q
    ||||    
T  4840670 aaaa 4840667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 1298822 - 1298738
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    ||||| ||||||||||||||||||||| ||| |||||||||| |||  |||||||  ||| ||||| |||||  ||||||||||||    
T  1298822 tttaattttgtctttttcttataaagt-aagggcaatttagtaaaaacgttatattcaatgattatttcattttatttcttaatct 1298738  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 34225860 - 34225944
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    ||||||||||||||||||||||||||| ||| |||||||||| ||| | |||| | |||| ||||| |||||  ||| ||||||||    
T  34225860 tttaagtttgtctttttcttataaagt-aagggcaatttagtaaaattattatgtctaatgattatttcatttcattccttaatct 34225944  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 1381849 - 1381913
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattat 285  Q
    ||||||||| ||||||||||||||||| ||| ||| |||||| |||||||||| | |||| |||||    
T  1381849 tttaagtttttctttttcttataaagt-aagagcagtttagtaaaagtgttatgtctaatgattat 1381913  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 14378290 - 14378202
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||| ||||||||||||||||| ||| ||| |||||| ||||||||||||  ||| ||||| |||||| |||  |||| ||||||    
T  14378290 tttaaatttatctttttcttataaagt-aagggcagtttagtaaaagtgttatattaaatgattatttcattctattcattaaactgtgt 14378202  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 309
Target Start/End: Complemental strand, 40987324 - 40987236
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgt 309  Q
    ||||| ||| ||||||||||||||||| |||  ||||||||| |||||||||| | |||| ||||| |||||  ||| |||||| |||||    
T  40987324 tttaaatttatctttttcttataaagt-aaggacaatttagtaaaagtgttatgtctaatgattatttcatttcattccttaatatgtgt 40987236  T

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Target: scaffold0072 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 305
Target Start/End: Complemental strand, 12123 - 12040
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    |||||||||||||||||||||||||||||   ||| |||||| |||||||||| | |||| ||||| |||||| ||| ||||||||    
T  12123 tttaagtttgtctttttcttataaagtaa--ggcagtttagtaaaagtgttatgtctaatgattatttcattccattccttaatct 12040  T

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Target: scaffold0238 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 314
Target Start/End: Complemental strand, 16081 - 15989
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaa 314  Q
    |||||||||||| |||| ||||||||||||| | | |||||| ||| ||||||||||||| ||||| ||||| ||||| ||||| ||||| ||||    
T  16081 tttaagtttgtcatttt-ttataaagtaaag-gtagtttagtaaaaatgttatatataatgattatttcatttaattttttaatatgtgtttcaa 15989  T

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Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 220 - 305
Target Start/End: Original strand, 1653 - 1737
Alignment:
Q  220 tttaagtttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatct 305  Q
    ||||| ||||||||||||||||||||| ||| |||||||||| |||  |||||||  ||| ||||| |||||  ||||||||||||    
T  1653 tttaattttgtctttttcttataaagt-aagggcaatttagtaaaaacgttatatccaataattatttcattatatttcttaatct 1737  T

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Target: scaffold0580 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0580
Description:

Target: scaffold0580; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 1690 - 1785
Alignment:
Q  226 tttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcctaaa 322  Q
    ||||||||||||||||||||| |||  || |||||| ||| ||||||||  ||| ||||| |||||  |||||||||||| |||  ||||| |||||    
T  1690 tttgtctttttcttataaagt-aaggtcagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtgccaacgtctaaa 1785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0580; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 226 - 322
Target Start/End: Original strand, 9429 - 9524
Alignment:
Q  226 tttgtctttttcttataaagtaaagcgcaatttagttaaagtgttatatataattattatatcattcaatttcttaatctgtgtatcaacgcctaaa 322  Q
    ||||||||||||||||||||| |||  || |||||| ||| ||||||||  ||| ||||| |||||  |||||||||||| |||  ||||| |||||    
T  9429 tttgtctttttcttataaagt-aaggtcagtttagtaaaaatgttatatccaatgattatttcatttcatttcttaatctatgtgccaacgtctaaa 9524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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