View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0328_low_1 (Length: 594)
Name: NF0328_low_1
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0328_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Complemental strand, 714471 - 713929
Alignment:
| Q |
1 |
tattatccatatacaattatacattcaaacagattaataattgtaacttgaattttattgcattgataatgaacaaagactatagcatgaattctataat |
100 |
Q |
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| T |
714471 |
tattatccatatacaattatacattcaaacagattaataattgtaacttgaattttattgcattgataatgaacaaagaatatagcatgaattctataat |
714372 |
T |
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| Q |
101 |
acaactctctttgttctaattaagaagtattgttttattgtactaagttaatagacatgtggagtcacaaactggaaacctcacttccctttcgctgaag |
200 |
Q |
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| T |
714371 |
acaactctctttgttctaattaagaagtattgttttattgtactaagttaatagacatgtggagtcacaaactggaaacctcacttccctttcgctgaag |
714272 |
T |
|
| Q |
201 |
caatagttgtttattttgtgaaaattgactggaagacatttaagactgcatcaaattattctactcacaattcatgtttaaaaaattgattgataccttt |
300 |
Q |
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| T |
714271 |
caatagttgtttattttgtgaaaattgactggaagacatttaagactgcatcaaattattctactcacaattcatgtttaaaaaattgattgataccttt |
714172 |
T |
|
| Q |
301 |
tccattattacatataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgtagtattatgtctggcccatatttatgtaataaag |
400 |
Q |
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| T |
714171 |
tccattattacatataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgtagtattatgtctggcccatatttatgtaataaag |
714072 |
T |
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| Q |
401 |
ctaaagtaaattttgttcacgacttcatgccttgtttaataagtttctgatcattcttatcaaggtttaattgtttttgcttttcagtataaatagtaag |
500 |
Q |
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| T |
714071 |
ctaaagtaaattttgttcacgacttcatgccttgtttaataagtttctgatcattcttatcaaggtttaattgtttttgcttttcagtataaatagtaag |
713972 |
T |
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| Q |
501 |
aaggaaagaaaaaccacctcattgatctatttatttaataagt |
543 |
Q |
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| T |
713971 |
aaggaaagaaaaaccacctcattgatctatttatttaataagt |
713929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 8e-44; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 453 - 543
Target Start/End: Complemental strand, 3763868 - 3763778
Alignment:
| Q |
453 |
attcttatcaaggtttaattgtttttgcttttcagtataaatagtaagaaggaaagaaaaaccacctcattgatctatttatttaataagt |
543 |
Q |
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| T |
3763868 |
attcttatcaaggtttaattgtttttgcttttcagtataaatagtaagaaggaaagaaaaaccacctcattgatctatttatttaataagt |
3763778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 3765142 - 3765086
Alignment:
| Q |
1 |
tattatccatatacaattatacattcaaacagattaataattgtaacttgaatttta |
57 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
3765142 |
tattattcatatacaattattcattcaaacagattaataattgtaacttgaacttta |
3765086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 810566 - 810477
Alignment:
| Q |
53 |
ttttattgcattgata-atgaacaaagactatagcatgaattctataatacaactctctttgttctaattaagaagtattgttttattgt |
141 |
Q |
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| T |
810566 |
ttttattgcattgatagatgaacaaagaatatagcatgaattctataatacaactctctttgttctaattaggaagtattgttttattgt |
810477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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