View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0328_low_10 (Length: 326)

Name: NF0328_low_10
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0328_low_10
NF0328_low_10
[»] scaffold0145 (1 HSPs)
scaffold0145 (87-320)||(12552-12785)
[»] chr4 (5 HSPs)
chr4 (87-320)||(16284932-16285165)
chr4 (87-244)||(18231449-18231604)
chr4 (88-244)||(11555916-11556070)
chr4 (101-214)||(11098355-11098468)
chr4 (255-320)||(11098291-11098356)
[»] chr6 (4 HSPs)
chr6 (87-320)||(10641216-10641449)
chr6 (87-319)||(14970060-14970294)
chr6 (87-242)||(10906699-10906854)
chr6 (128-244)||(9191065-9191181)
[»] chr7 (5 HSPs)
chr7 (88-244)||(22614701-22614857)
chr7 (87-244)||(11655474-11655631)
chr7 (87-317)||(20025970-20026200)
chr7 (101-202)||(13477489-13477596)
chr7 (143-315)||(4531649-4531820)
[»] chr5 (2 HSPs)
chr5 (87-320)||(24831922-24832161)
chr5 (103-238)||(13935715-13935849)
[»] chr3 (6 HSPs)
chr3 (87-320)||(14481522-14481761)
chr3 (153-320)||(17790941-17791108)
chr3 (153-320)||(19099381-19099548)
chr3 (177-237)||(22159871-22159931)
chr3 (177-237)||(21975275-21975335)
chr3 (177-237)||(21997706-21997766)
[»] chr2 (3 HSPs)
chr2 (100-315)||(44586360-44586574)
chr2 (211-320)||(24786268-24786377)
chr2 (153-238)||(16862347-16862432)
[»] scaffold1001 (1 HSPs)
scaffold1001 (87-244)||(1389-1545)
[»] chr1 (1 HSPs)
chr1 (125-238)||(1567041-1567154)


Alignment Details
Target: scaffold0145 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0145
Description:

Target: scaffold0145; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 87 - 320
Target Start/End: Original strand, 12552 - 12785
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12552 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 12651  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  12652 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 12751  T
Q  287 acatccatttattttattttagtattcatctcac 320  Q
    ||||||||||||||||||||||||||||||||||    
T  12752 acatccatttattttattttagtattcatctcac 12785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 87 - 320
Target Start/End: Complemental strand, 16285165 - 16284932
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16285165 gacatcatcattctcatcattattataatataaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtc 16285066  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 286  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  16285065 atagttataggactccccatcattactctttatcatccacttatatcaccaccttatcttgtcgttattccacaccttacgcgtgactcattctatgcca 16284966  T
Q  287 acatccatttattttattttagtattcatctcac 320  Q
    ||||||||||||||||||||||||||||||||||    
T  16284965 acatccatttattttattttagtattcatctcac 16284932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 87 - 244
Target Start/End: Complemental strand, 18231604 - 18231449
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||| ||||||||||||||||||||||| ||  ||||||||| | |||||||||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  18231604 gacatcgtcattctcatcattattataatataacatcatcattttctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtt 18231505  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 244  Q
    | || ||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||||    
T  18231504 acag-tat-ggattcctcatcattactctctatcaaccgtttatatcaccaccttatc 18231449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 88 - 244
Target Start/End: Original strand, 11555916 - 11556070
Alignment:
Q  88 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 187  Q
    ||||| ||||||||||||||||||||||| ||  ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| |    
T  11555916 acatcgtcattctcatcattattataatataacatcaacatttcctatcgtagtaatttctttacatatatataatattaatcgtcatcactctttgtga 11556015  T
Q  188 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 244  Q
     || ||| ||| ||  |||||||||||| ||||| ||  ||||||||||||||||||    
T  11556016 cag-tat-ggattcatcatcattactctctatcaaccatttatatcaccaccttatc 11556070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 101 - 214
Target Start/End: Complemental strand, 11098468 - 11098355
Alignment:
Q  101 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggact 200  Q
    |||||||||||||||| ||  |||| ||||||||   |||||||||||||||||||||||||||||| ||||||| ||||||  ||| | ||||||||||    
T  11098468 catcattattataatataacatcattatttcccacaatagtaatttctttacatatatataatattaatcgtcatcactctccattacaattataggact 11098369  T
Q  201 ccccatcattactc 214  Q
    || |||||||||||    
T  11098368 cctcatcattactc 11098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 11098356 - 11098291
Alignment:
Q  255 tccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 320  Q
    ||||||||||| ||||||||| || || |  ||||||| ||||||||| |||| ||||||||||||    
T  11098356 tccacaccttatgcgtgactccttatacgtcaacatccctttattttactttattattcatctcac 11098291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 87 - 320
Target Start/End: Complemental strand, 10641449 - 10641216
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||     
T  10641449 gacatcatcattctcatcattattataatataacctcataatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcgctctctgtc 10641350  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 286  Q
    | |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||   || ||| ||||| ||| ||| ||||||||||||| || |    
T  10641349 acagttataggactcctcgtcattactctctatcatccgcttatatcaccaccttatctcttcattaatccacgcctcacgtgtgactcattctacgcca 10641250  T
Q  287 acatccatttattttattttagtattcatctcac 320  Q
    ||||||||||| ||||||||| ||||||||||||    
T  10641249 acatccatttactttattttattattcatctcac 10641216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 319
Target Start/End: Original strand, 14970060 - 14970294
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatat--atataatattactcgtcattactctctg 184  Q
    |||||| ||||||||||  ||||||||||| ||  ||||||||||||||||  ||||||||| || ||||  |||||||||||  |||||| | ||| ||    
T  14970060 gacatcgtcattctcattgttattataatataacatcatcatttcccatcgcggtaatttctataaatatatatataatattaaccgtcatcattctttg 14970159  T
Q  185 ttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgc 284  Q
    | | |||| ||||||||| |||||||||||| ||||||||  |||||||||||| |||||   || ||| ||||||| ||||| |||||||||||||       
T  14970160 tcacagttgtaggactcctcatcattactctctatcatccatttatatcaccactttatctcttcattaatccacactttacgagtgactcattctacat 14970259  T
Q  285 taacatccatttattttattttagtattcatctca 319  Q
     ||||| | |||||||||||||| ||||| |||||    
T  14970260 caacattcctttattttattttattattcttctca 14970294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 242
Target Start/End: Complemental strand, 10906854 - 10906699
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||| ||||||||||||||||||||||| ||  |||||||||| |||| || | || | || ||||||| |||||||||  |  | | |||||||||     
T  10906854 gacatcgtcattctcatcattattataatataacatcatcatttcacatcctatttatatgttgacatatacataatattaacccccttcactctctgtc 10906755  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccacctta 242  Q
      |||||||||| ||| | |||||||||||| ||| ||| ||||||||||||||||    
T  10906754 gcagttataggattcctcgtcattactctttgtcaaccgtttatatcaccacctta 10906699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 9191065 - 9191181
Alignment:
Q  128 tttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgct 227  Q
    |||| ||||||| | |||| || |||||||||| |||| | || |||| ||||| | | | |||||||||| ||| |||||||||||| ||||| ||| |    
T  9191065 tttctcatcgtatttatttattcacatatatattatatcaatcatcatcactctttatcacagttataggattcctcatcattactctctatcaaccgtt 9191164  T
Q  228 tatatcaccaccttatc 244  Q
    |||||||||||||||||    
T  9191165 tatatcaccaccttatc 9191181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 22614857 - 22614701
Alignment:
Q  88 acatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtta 187  Q
    ||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |    
T  22614857 acatcgtcattctcttcattattataatataacctcatcatttcccatcgtagtaatttctttacatatatataatattaatcgtcatcactctctgtca 22614758  T
Q  188 tagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 244  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||    
T  22614757 tagttataggactcctcatcaatactctctatcatccgcttatatcaccaccttatc 22614701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 11655474 - 11655631
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||| || || | |||||||||     
T  11655474 gacatcgtcattctcttcattattataatataacctcatcattttccatcgtagtaatttctttacatatatataatattaatcatcgtcactctctgtc 11655573  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 244  Q
    | || ||||||||||| ||||| || ||||||||||||||||||||||||||||||||    
T  11655574 acagctataggactcctcatcaatattctttatcatccgcttatatcaccaccttatc 11655631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 87 - 317
Target Start/End: Original strand, 20025970 - 20026200
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||||||||| ||||  ||||||||||| ||  ||||||||| ||||| | |||||||||||||||||||||||||| | ||||||| ||||| |||     
T  20025970 gacatcatcattgtcattgttattataatataacatcatcatttgccatcatggtaatttctttacatatatataatatgaatcgtcatcactctttgtc 20026069  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgcta 286  Q
    |||||| ||||||||| | |||||| ||| ||||||  | ||||||||| ||||||||   || ||| || |||||||||||||||||||||  | |  |    
T  20026070 atagttgtaggactcctcttcattattctctatcatatgtttatatcacaaccttatctcttcattaatcaacaccttacgcgtgactcatttgacgtca 20026169  T
Q  287 acatccatttattttattttagtattcatct 317  Q
    |||||| |||||| ||||||| |||||||||    
T  20026170 acatccctttattctattttattattcatct 20026200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 202
Target Start/End: Complemental strand, 13477596 - 13477489
Alignment:
Q  101 catcattattataatacaaactcatcatttcccatcgtagtaatttctttacatata------tataatattactcgtcattactctctgttatagttat 194  Q
    |||||||||||||||| ||  ||||| ||||||||||||||||||||||||||||||      |||||||||| ||||||| ||||| ||||| ||||||    
T  13477596 catcattattataatataacatcatcctttcccatcgtagtaatttctttacatatatatatatataatattaatcgtcatcactctttgttacagttat 13477497  T
Q  195 aggactcc 202  Q
    ||||||||    
T  13477496 aggactcc 13477489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 315
Target Start/End: Complemental strand, 4531820 - 4531649
Alignment:
Q  143 atttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccacctta 242  Q
    |||| |||||||||||||||||| | | ||||| |||||  || | | |||| ||| ||| |||||||||||| ||||| ||| ||||||||||||||||    
T  4531820 atttatttacatatatataatatcaattgtcatcactcttcgtcaca-ttat-ggattcctcatcattactctctatcaaccgtttatatcaccacctta 4531723  T
Q  243 tcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttattttattttagtattcat 315  Q
    ||   || ||| ||||  |||||| ||||||||| || || || |||| || | |||||||||||| |||||||    
T  4531722 tctcttcattaatccaacccttacacgtgactcatttatacgccaacacccctctattttattttattattcat 4531649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 87 - 320
Target Start/End: Complemental strand, 24832161 - 24831922
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatat------ataatattactcgtcattactc 180  Q
    |||||| |||||||||||| ||||||| || || ||||||||||| ||||||||||||||||||||||||||      ||||||||| || |||| ||||    
T  24832161 gacatcgtcattctcatcaatattatagtataacctcatcatttctcatcgtagtaatttctttacatatatgtatatataatattaatcatcatcactc 24832062  T
Q  181 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 280  Q
    | ||| | | |||||||||||| |||||||||||| ||||||||||||| ||||||| | ||||   || ||| || || ||||||||||||||||||||    
T  24832061 tttgtcacaattataggactcctcatcattactctctatcatccgcttacatcaccatcgtatctcttcattagtcaactccttacgcgtgactcattct 24831962  T
Q  281 atgctaacatccatttattttattttagtattcatctcac 320  Q
    | || ||||||| |||||||||||||| ||||||||||||    
T  24831961 acgccaacatccctttattttattttattattcatctcac 24831922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 238
Target Start/End: Original strand, 13935715 - 13935849
Alignment:
Q  103 tcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactcc 202  Q
    |||||||||||||| ||  |||| |||||| |||||| | |||  |||||||| ||||| ||| | | ||||| ||||| ||| |  ||||||||| |||    
T  13935715 tcattattataatataacatcattatttcc-atcgtatttattcatttacatagatatagtatcaattgtcatcactctttgtcaccgttataggattcc 13935813  T
Q  203 ccatcattactctttatcatccgcttatatcaccac 238  Q
      ||||||||||| ||||| ||| ||||||||||||    
T  13935814 taatcattactctctatcaaccgtttatatcaccac 13935849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 87 - 320
Target Start/End: Complemental strand, 14481761 - 14481522
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatata------atattactcgtcattactc 180  Q
    |||||| |||| ||||||| ||||||| || || |||||||| ||||||||||||||||||||||||||||||||      |||||| || |||| ||||    
T  14481761 gacatcgtcatcctcatcaatattatagtataacctcatcatgtcccatcgtagtaatttctttacatatatatatatataatattaatcatcatcactc 14481662  T
Q  181 tctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattct 280  Q
    | ||| | |||||||||||||| |||||||||||| ||||||||||||| |||||||   ||||   || ||| ||||| ||||||||||||||||||||    
T  14481661 tttgtcacagttataggactcctcatcattactctctatcatccgcttacatcaccattgtatctcttcattaatccactccttacgcgtgactcattct 14481562  T
Q  281 atgctaacatccatttattttattttagtattcatctcac 320  Q
    | || ||||||| |||||||||||||| ||||||||||||    
T  14481561 acgccaacatccctttattttattttattattcatctcac 14481522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 17790941 - 17791108
Alignment:
Q  153 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 252  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  17790941 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 17791040  T
Q  253 attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 320  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||  || |||||| |||||    
T  17791041 aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcac 17791108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 153 - 320
Target Start/End: Original strand, 19099381 - 19099548
Alignment:
Q  153 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgtt 252  Q
    ||||||||||||||| || |||| ||||||||| | |||||||||||||| |||||||||||| | ||||||||||||| || |||||||||   || ||    
T  19099381 atatatataatattaatcatcatcactctctgtcaaagttataggactcctcatcattactctctttcatccgcttataccatcaccttatctcttcatt 19099480  T
Q  253 attccacaccttacgcgtgactcattctatgctaacatccatttattttattttagtattcatctcac 320  Q
    | ||||||| |||| |||| ||||||||| ||| |||||| |||| |||||  || |||||| |||||    
T  19099481 aatccacactttactcgtggctcattctacgctgacatccctttactttatcgtattattcacctcac 19099548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 22159871 - 22159931
Alignment:
Q  177 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 237  Q
    ||||| ||| |||||||||||| ||| |||||||||||| ||||| ||| |||||||||||    
T  22159871 actctttgtcatagttataggattcctcatcattactctctatcaaccgtttatatcacca 22159931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 21975275 - 21975335
Alignment:
Q  177 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 237  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21975275 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21975335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 237
Target Start/End: Original strand, 21997706 - 21997766
Alignment:
Q  177 actctctgttatagttataggactccccatcattactctttatcatccgcttatatcacca 237  Q
    ||||| ||| |||||||| ||| ||| |||||||||||| ||||| ||| |||||||||||    
T  21997706 actctttgtcatagttattggattcctcatcattactctctatcaaccgtttatatcacca 21997766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 315
Target Start/End: Complemental strand, 44586574 - 44586360
Alignment:
Q  100 tcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggac 199  Q
    |||| |||||||||||  ||  ||||||||||  ||||||||||||||||||||||||||||||| || ||||||| ||||| ||||| || ||| |||     
T  44586574 tcattattattataatttaacatcatcatttcatatcgtagtaatttctttacatatatataatactaatcgtcatcactctttgttacag-tat-ggat 44586477  T
Q  200 tccccatcattactctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactca-ttctatgctaacatccatttat 298  Q
    ||| |||||||||||| ||||| ||| ||||||||||||||||||   |  ||| ||||  |||||||| ||||||| |||||||  ||||||| | |||    
T  44586476 tcctcatcattactctctatcaaccgtttatatcaccaccttatctctttattaatccaacccttacgcatgactcatttctatgtcaacatccctctat 44586377  T
Q  299 tttattttagtattcat 315  Q
    ||||||| | |||||||    
T  44586376 tttatttcattattcat 44586360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 24786268 - 24786377
Alignment:
Q  211 actctttatcatccgcttatatcaccaccttatcctgtcgttattccacaccttacgcgtgactcattctatgctaacatccatttattttattttagta 310  Q
    ||||| |||||| || |||||||  |||||| || | || ||| || | |||||||| |||||| |||||| |  ||||||| |||||||||||||| ||    
T  24786268 actctctatcattcgtttatatcttcaccttctcttttcattaatctataccttacgtgtgacttattctacgtcaacatccctttattttattttatta 24786367  T
Q  311 ttcatctcac 320  Q
    ||||||||||    
T  24786368 ttcatctcac 24786377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 238
Target Start/End: Original strand, 16862347 - 16862432
Alignment:
Q  153 atatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatccgcttatatcaccac 238  Q
    ||||||||||||||| || ||   || || |||| ||||||||||| ||| |||||||| ||||||||| ||| |||||| |||||    
T  16862347 atatatataatattaatcatcgacaccctttgttgtagttataggattcctcatcattagtctttatcaaccgtttatattaccac 16862432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 1389 - 1545
Alignment:
Q  87 gacatcatcattctcatcattattataatacaaactcatcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgtt 186  Q
    |||||| ||||||||||||||||||||||| || |||||||||| |||| || ||||||| ||| || ||||| ||||||| | ||||| ||||||| |     
T  1389 gacatcgtcattctcatcattattataatataacctcatcattttccattgttgtaatttatttccacatata-aatattaatagtcatcactctctttc 1487  T
Q  187 atagttataggactccccatcattactctttatcatccgcttatatcaccaccttatc 244  Q
    |  ||||||||||||| ||| | |||||| |||||||||| ||| ||| ||| |||||    
T  1488 acggttataggactcctcataaatactctatatcatccgcatatgtcatcacattatc 1545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 238
Target Start/End: Complemental strand, 1567154 - 1567041
Alignment:
Q  125 tcatttcccatcgtagtaatttctttacatatatataatattactcgtcattactctctgttatagttataggactccccatcattactctttatcatcc 224  Q
    ||||||| ||||||| | |||| |||||||||||||||||| | ||||||| ||||| ||| | | ||||| || ||| ||| ||||| || ||||  ||    
T  1567154 tcatttctcatcgtatttatttgtttacatatatataatatcaatcgtcatcactctttgtcacaattatatgattcctcattattaccctctatccacc 1567055  T
Q  225 gcttatatcaccac 238  Q
    | ||||||||||||    
T  1567054 gtttatatcaccac 1567041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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