View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0328_low_16 (Length: 263)
Name: NF0328_low_16
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0328_low_16 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] scaffold0178 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 5288143 - 5287881
Alignment:
| Q |
1 |
tttggcgaggtcagtttttgagtttttagcggatagcatagattataagttcatatgagcaaaatagacttgtgtggtaacacttctttctcacgagctt |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5288143 |
tttggtgaggtcagtttttgagtttttagcggatagcatagattataagttcatatgagcaaaatagacttgtttggtaacacttctttctcacgagctt |
5288044 |
T |
|
| Q |
101 |
ataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagctttagtacacccactattgttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||| ||||||||||||| |||||||| ||||| || | |
|
|
| T |
5288043 |
gtaagattattttactagcttattgacaggatttgacaaccggtggacttccaacttttgttgatgatggtaatagctttggtacacccgctatttttga |
5287944 |
T |
|
| Q |
201 |
agaaaacttcattaatgaataatgctggtttacaatgagttgagtggtttgagttcatgtcta |
263 |
Q |
| |
|
||| ||||||||||||||||||| ||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
5287943 |
agatgacttcattaatgaataatgttggttaacaatgagttgagtgatttgagttcatttcta |
5287881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 25024562 - 25024420
Alignment:
| Q |
97 |
gcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagctttagtacacccactattg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| || ||||||| || ||||||||||||||||||||| ||||||||||||| || || || |||||| |
|
|
| T |
25024562 |
gcttataagattattttactagcttattaacatggattgacaattggtggacttccaacttttgttgatgctggtaatagctttggtgcatccgctattg |
25024463 |
T |
|
| Q |
197 |
ttaaagaaaacttcattaatgaataatgctggtttacaatgag |
239 |
Q |
| |
|
|| |||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
25024462 |
ttgaagataacttcattaatgaataacgctggttaacaatgag |
25024420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 43727997 - 43727869
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||| | |||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
43727997 |
tggtaacaattctttctcataggcttataagattattttactagcttattgacatgagttgataactggtgtacttccaacttttgttgatgttggtaat |
43727898 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| || ||||| |||||||| |||| |
|
|
| T |
43727897 |
agctttggtgcacccgctattgttgaaga |
43727869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 194
Target Start/End: Original strand, 24276401 - 24276521
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggt-ttgacaaccagttgacttccaacttttgttgatgttggtaa |
173 |
Q |
| |
|
|||||||| |||||||| ||||| ||||||||||| |||||||||||||||| || || |||||||| || |||||||||||||||||||||||||| | |
|
|
| T |
24276401 |
tggtaacaattctttctaacgaggttataagattaatttactagcttattgatagagtcttgacaactggtggacttccaacttttgttgatgttggtta |
24276500 |
T |
|
| Q |
174 |
tagctttagtacacccactat |
194 |
Q |
| |
|
||||||| || ||||| |||| |
|
|
| T |
24276501 |
tagctttggtgcacccgctat |
24276521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 75 - 181
Target Start/End: Original strand, 23180059 - 23180168
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttg---acttccaacttttgttgatgttggt |
171 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||| || | |||| |||| || | ||||||||||||||||||||||||| |
|
|
| T |
23180059 |
tggtaacaattatttctcacgagcttataagattattttactagcttattggcaaagcttgataacccgtggagtacttccaacttttgttgatgttggt |
23180158 |
T |
|
| Q |
172 |
aatagcttta |
181 |
Q |
| |
|
|||||||||| |
|
|
| T |
23180159 |
aatagcttta |
23180168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 75 - 198
Target Start/End: Complemental strand, 9230402 - 9230279
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| || ||||| ||| |||||||||||||||||||||||||||||||| || |||| ||| | | ||||||||||||||||||||| |||| |
|
|
| T |
9230402 |
tggtaacaattttttctaacgggcttataagattattttactagcttattgacatggcttgataactgatgtatttccaacttttgttgatgttgataat |
9230303 |
T |
|
| Q |
175 |
agctttagtacacccactattgtt |
198 |
Q |
| |
|
|||||| || ||||| |||||||| |
|
|
| T |
9230302 |
agctttggtgcacccgctattgtt |
9230279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 23804672 - 23804762
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgat |
165 |
Q |
| |
|
||||||| ||||||||||| | |||||||||||||||||||||||||||||||| | |||||||| | |||||| ||||||||||||| |
|
|
| T |
23804672 |
tggtaaccattctttctcacaaacttataagattattttactagcttattgacagagcttgacaacggggggacttctaacttttgttgat |
23804762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8035365 - 8035569
Alignment:
| Q |
1 |
tttggcgaggtcagtttttgagtttttagcggatagcatagattataagttcatatgagcaaaatagacttgtgtggtaacacttctttctcacgagctt |
100 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| | ||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||||| | |
|
|
| T |
8035365 |
tttggcgatgtcagttttcgagtttttagcggataacgtagcttataagttcatatgatcaaaatagacttgtttggtaacaattctttctcacgagcat |
8035464 |
T |
|
| Q |
101 |
ataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagctttagtacacccactattgttaa |
200 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||| || |||| ||| |||| | |
|
|
| T |
8035465 |
ataagattattttac-----------------ttgacaactcgtggacttccaacttttgttgatgttggtaatagctttggtgcacctgctactgttga |
8035547 |
T |
|
| Q |
201 |
agaaaacttcattaatgaataa |
222 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
8035548 |
agataacttcattaatgaataa |
8035569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 12180699 - 12180827
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||| ||||||||||||||| |||| ||| | ||||| ||||||||||||||||| ||||| |
|
|
| T |
12180699 |
tggtaacaattttttctcacgggcttataagattattttaccagcttattgacagggcttgataactgatggactttcaacttttgttgatgtttgtaat |
12180798 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
| |||| | ||||| |||||||| |||| |
|
|
| T |
12180799 |
aactttggcgcacccgctattgttgaaga |
12180827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 11970961 - 11970856
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||||| |||| || |||||||||||| ||| |||||| ||||||| ||||||||||||| |
|
|
| T |
11970961 |
tggtaacaattctttctcacatacttataaaattattttactagattatagatggggtttgacaactagtggacttcatacttttgctgatgttggtaat |
11970862 |
T |
|
| Q |
175 |
agcttt |
180 |
Q |
| |
|
|||||| |
|
|
| T |
11970861 |
agcttt |
11970856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 75 - 236
Target Start/End: Complemental strand, 24333715 - 24333554
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| || |||||||||||||| |||||||||||||| |
|
|
| T |
24333715 |
tggtaacaattctttctcacgggcttataagattattttactagcttattgacaagacttgacaaccggtggacttccaacttttattgatgttggtaat |
24333616 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaagaaaacttcattaatgaataatgctggtttacaat |
236 |
Q |
| |
|
|| ||| || |||| ||||||| |||| |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
24333615 |
agttttggtgcacctgctattgtcgaagataacttcgttaatgaataacgctggttaacaat |
24333554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 28846622 - 28846494
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||| || |
|
|
| T |
28846622 |
tggtaacaattctttctcacggacttataagattattttactagcttattgacagggtttggcaactggtagacttacaacttttgttgatgttggttat |
28846523 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| || ||||| ||||||| |||| |
|
|
| T |
28846522 |
agctttggtgcacccgatattgttgaaga |
28846494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 13152568 - 13152688
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||| |||||| || |||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
13152568 |
tggtaacaattctttctcacgggcttataagattattttactagctttttgacatggcttgataactggtgtacttccaacttttgttgatgttggtaat |
13152667 |
T |
|
| Q |
175 |
agctttagtacacccactatt |
195 |
Q |
| |
|
|||||| || ||||| ||||| |
|
|
| T |
13152668 |
agctttggtgcaccctctatt |
13152688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 180
Target Start/End: Complemental strand, 27190770 - 27190667
Alignment:
| Q |
77 |
gtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatag |
176 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||||||| |||||| || |||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
27190770 |
gtaacaattctttctcgcgggcttataagattattttactagcttgttgacatggcttgacaactggtggacttccaacttttgttgatgttggtaatag |
27190671 |
T |
|
| Q |
177 |
cttt |
180 |
Q |
| |
|
|||| |
|
|
| T |
27190670 |
cttt |
27190667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 14446836 - 14446711
Alignment:
| Q |
73 |
tgtggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggta |
172 |
Q |
| |
|
|||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||| |
|
|
| T |
14446836 |
tgtggtaacaattctttctcgcagacttataagattattttactagcttattgacaggacttgactactggtggacttccaacttttgttgatgttggta |
14446737 |
T |
|
| Q |
173 |
atagctttagtacacccactattgtt |
198 |
Q |
| |
|
|||||||| || ||||| ||||||| |
|
|
| T |
14446736 |
atagctttggtgtacccaatattgtt |
14446711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 203
Target Start/End: Complemental strand, 9256348 - 9256294
Alignment:
| Q |
149 |
ttccaacttttgttgatgttggtaatagctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||| |||| ||| |||| |
|
|
| T |
9256348 |
ttccaacttttgttgatgttggtaatagctttggtgcacccgctatcgttgaaga |
9256294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 75 - 180
Target Start/End: Complemental strand, 51261980 - 51261875
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
51261980 |
tggtaacaattctttttcacgagcttattatattattttactagcttattgacagggtttgacaactggtggacttccaacttttgttgatgttggtaat |
51261881 |
T |
|
| Q |
175 |
agcttt |
180 |
Q |
| |
|
|||||| |
|
|
| T |
51261880 |
agcttt |
51261875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 3857050 - 3857178
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||| ||||| |
|
|
| T |
3857050 |
tggtaacaattatttctcacgggcttataagattattttactagcttattgacagggcttgataactggtggacttccaacttttgttgatgttcgtaat |
3857149 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| || |||| |||||||| |||| |
|
|
| T |
3857150 |
agctttggtgcacctgctattgttgaaga |
3857178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 176
Target Start/End: Complemental strand, 15667974 - 15667873
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||| | | |||||||||||||||||| ||||||||| |||| |||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
15667974 |
tggtaacaattctttctcatgggtttataagattattttacttgcttattgatagggcttgataactagtggacttccaacttttgttgatgttggtaat |
15667875 |
T |
|
| Q |
175 |
ag |
176 |
Q |
| |
|
|| |
|
|
| T |
15667874 |
ag |
15667873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 31944617 - 31944489
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
31944617 |
tggtaacaattctttctcacgagcttataagattattttactagcttattggcagggcttgataactggtggacttccaacttttgttaatgttggtaat |
31944518 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| | ||||| |||||||| |||| |
|
|
| T |
31944517 |
agctttcatgcacccgctattgttgaaga |
31944489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 215
Target Start/End: Complemental strand, 51379594 - 51379502
Alignment:
| Q |
123 |
ttgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagctttagtacacccactattgttaaagaaaacttcattaa |
215 |
Q |
| |
|
|||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||| || |||| |||||||| |||| ||||||||||| |
|
|
| T |
51379594 |
ttgatagggcttgacaaccggtggacttccaacttttgttgatgttggtaatagctttggtgcacctgctattgttgaagacaacttcattaa |
51379502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 24104598 - 24104659
Alignment:
| Q |
98 |
cttataagattattttactagcttattgacagggtttgacaaccagttgacttccaactttt |
159 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | |||| ||| || |||||||||||||| |
|
|
| T |
24104598 |
cttataagattcttttactagcttattggcagagcttgataactggtggacttccaactttt |
24104659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 12539575 - 12539447
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||||||||||||||| || || |||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
12539575 |
tggtaacaattctttctcacgggcttataagattcttttactagcttattggcaaggcttgataactggtggacttccaacttttgttgatgttggtaat |
12539476 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| || ||||| ||||||||||||| |
|
|
| T |
12539475 |
agctttggtgcacccgctattgttaaaga |
12539447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 34317641 - 34317769
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||| | |||||||||| ||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||||||| |
|
|
| T |
34317641 |
tggtaacaattctttctcatggatttataagattcttttactagcttattgacaaagcttgataactggtggacttccaacttttgttgatgttggtaat |
34317740 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| || ||||| |||||||| |||| |
|
|
| T |
34317741 |
agctttggttcacccgctattgttgaaga |
34317769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 30559182 - 30559307
Alignment:
| Q |
78 |
taacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagc |
177 |
Q |
| |
|
||||| ||||||||| ||||||||||||| ||||||||||||||||||||| | ||||||||| || ||||| |||||||||||||||||||||||||| |
|
|
| T |
30559182 |
taacaattctttctcgcgagcttataagaatattttactagcttattgacaaagcttgacaaccggtggactttcaacttttgttgatgttggtaatagc |
30559281 |
T |
|
| Q |
178 |
tttagtacacccactattgttaaaga |
203 |
Q |
| |
|
||| || ||||| |||||||| |||| |
|
|
| T |
30559282 |
tttggtgcacccgctattgttgaaga |
30559307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 14498899 - 14498771
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| || || ||||||||||||||||||||||| |||| |
|
|
| T |
14498899 |
tggtaacaaatctttctcacgagcttataagattattttactagcttattgacatggcttgatgactggtgtacttccaacttttgttgatgttgataat |
14498800 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| |||||||| |||||||| |||| |
|
|
| T |
14498799 |
agctttggtacacccgctattgttgaaga |
14498771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 48606786 - 48606891
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
||||| || ||||||| ||||| | ||||||||||||||||||| |||||||||||||||| ||| ||| |||||||||||||||||||| |||||||| |
|
|
| T |
48606786 |
tggtagcaattctttcccacgaacatataagattattttactagaatattgacagggtttgataactagtggacttccaacttttgttgattttggtaat |
48606885 |
T |
|
| Q |
175 |
agcttt |
180 |
Q |
| |
|
|||||| |
|
|
| T |
48606886 |
agcttt |
48606891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 97 - 203
Target Start/End: Complemental strand, 30054844 - 30054738
Alignment:
| Q |
97 |
gcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagctttagtacacccactattg |
196 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||| | |||| | ||||| |||||| |
|
|
| T |
30054844 |
gcttgtaagattattttactagcttattggtagggcttgacaaccggtggacttccaacttttgttgatgttggtaatggttttaatgcacccgctattg |
30054745 |
T |
|
| Q |
197 |
ttaaaga |
203 |
Q |
| |
|
|| |||| |
|
|
| T |
30054744 |
ttgaaga |
30054738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 9637122 - 9636995
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| || |||||||||| ||||||||||||||| |||||||||||| ||||| || | |||| || ||||| ||||||||||||||||| ||||| |
|
|
| T |
9637122 |
tggtaacaattatttctcacgaacttataagattattt-actagcttattggcagggctttataaccggtggactttcaacttttgttgatgttagtaat |
9637024 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
||||| || ||||| |||||||| |||| |
|
|
| T |
9637023 |
ggctttggtgcacccgctattgttgaaga |
9636995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 52754030 - 52754086
Alignment:
| Q |
147 |
acttccaacttttgttgatgttggtaatagctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||| || ||||| |||||||| |||| |
|
|
| T |
52754030 |
actttcaacttttgttaatgttgataatagctttggtgcacccgctattgttgaaga |
52754086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 8785783 - 8785656
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||| || |||||||| ||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
8785783 |
tggtaacaattctttctcatt-gcttataagattattttactagcttattaacggggtttgataactagtggacttccaacttttgttgatgttggtaat |
8785685 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
|||||| || ||||| |||||||| |||| |
|
|
| T |
8785684 |
agctttggtgcacccgctattgttgaaga |
8785656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 11852716 - 11852569
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaat |
174 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | || || ||||||||||||||| ||||| |
|
|
| T |
11852716 |
tggtaataattctttctcacggacttataagattattttactagcttattgacaggacttgacaactgatggatttttcacttttgttgatgttagtaat |
11852617 |
T |
|
| Q |
175 |
agctttagtacacccactattgttaaagaaaacttcattaatgaataa |
222 |
Q |
| |
|
|| ||| || |||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
11852616 |
agttttggtgcacccactattgttgaagataacttcattaatgaataa |
11852569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 195
Target Start/End: Original strand, 27168971 - 27169089
Alignment:
| Q |
77 |
gtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatag |
176 |
Q |
| |
|
|||||| || ||||||| | |||||||||||||||||||||||||||||||| | |||| ||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
27168971 |
gtaacaattatttctcatgggcttataagattattttactagcttattgacaagacttgataactggtggacttccatcttttgttgatgttggtaatag |
27169070 |
T |
|
| Q |
177 |
ctttagtacacccactatt |
195 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
27169071 |
ctttggtacacccgctatt |
27169089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 203
Target Start/End: Complemental strand, 3055483 - 3055354
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaac-ttttgttgatgttggtaa |
173 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||| || |||| ||| ||| ||||| | | ||||||||||||| ||| |
|
|
| T |
3055483 |
tggtaacaattctttctcacgggcttataagattattttactagcttattgacatggcttgataactggtttacttctaccaatttgttgatgttgataa |
3055384 |
T |
|
| Q |
174 |
tagctttagtacacccactattgttaaaga |
203 |
Q |
| |
|
||||||| || ||||| |||||||| |||| |
|
|
| T |
3055383 |
tagctttggtgcacccgctattgttgaaga |
3055354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 23244744 - 23244834
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgat |
165 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||| | | || ||||||||||||||||| |
|
|
| T |
23244744 |
tggtaacaattctttctcattggcttataagattattttactagcttattgacagggcttgacaacgaatggaattccaacttttgttgat |
23244834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0178 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0178
Description:
Target: scaffold0178; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 17738 - 17613
Alignment:
| Q |
78 |
taacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttgatgttggtaatagc |
177 |
Q |
| |
|
||||| || ||||| | ||||||||||||||||||||||||||||||||||| | |||| ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
17738 |
taacaattatttctaatgagcttataagattattttactagcttattgacagagattgataactggtggacttccaacttttgttgatgttggtaatagt |
17639 |
T |
|
| Q |
178 |
tttagtacacccactattgttaaaga |
203 |
Q |
| |
|
||| || |||||||| ||||| |||| |
|
|
| T |
17638 |
tttggtgcacccacttttgttgaaga |
17613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 435529 - 435617
Alignment:
| Q |
75 |
tggtaacacttctttctcacgagcttataagattattttactagcttattgacagggtttgacaaccagttgacttccaacttttgttg |
163 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||| |||||||||| || |||||||| || |||||| ||||||||||| |
|
|
| T |
435529 |
tggtaacaattttttctcacgagcttataagattattttactaacttattgacatgggttgacaactggtggacttcgaacttttgttg |
435617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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