View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0328_low_19 (Length: 251)
Name: NF0328_low_19
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0328_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 8845127 - 8844883
Alignment:
| Q |
1 |
ctattctttttcaactttctccctatcatctccaacattttcttttcatgcttgacatgactacaaaacattgattgagatagttcagaatgaataacta |
100 |
Q |
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| T |
8845127 |
ctattctttttcaactttctccctatcatctccaacattttcttttcatgcttgacatgactacaaaacattgattgagatagttcagaatgaataacta |
8845028 |
T |
|
| Q |
101 |
caaatgaaacagtttaaaattagcatgaaatattgttaagcataccttccagcaaagacaataatcctttgatgttgctttttattttgacgatgcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8845027 |
caaatgaaacagtttaaaattagcatgaaatattgttaagcataccttccagcaaagacaataatcctttgatgttgctttttattttgacgatgcttaa |
8844928 |
T |
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| Q |
201 |
gagccaattgtgccacctgaataccagcagctaggttcatctcac |
245 |
Q |
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| T |
8844927 |
gagccaattgtgccacctgaataccagcagctaggttcatctcac |
8844883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 31884111 - 31884215
Alignment:
| Q |
141 |
cataccttccagcaaagacaataatcctttgatgttgctttttattttgacgatgcttaagagccaattgtgccacctgaataccagcagctaggttcat |
240 |
Q |
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||||||||||| |||||| | ||||||||| || ||||| ||||| || ||||||||||||||||| |||||||||||||| ||||||||||||| || |
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| T |
31884111 |
cataccttccacaaaagacgacaatcctttgctgctgcttcttattctgccgatgcttaagagccaactgtgccacctgaatggcagcagctaggtttat |
31884210 |
T |
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| Q |
241 |
ctcac |
245 |
Q |
| |
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||||| |
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| T |
31884211 |
ctcac |
31884215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31883966 - 31884028
Alignment:
| Q |
1 |
ctattctttttcaactttctccctatcatctccaacattttcttttcatgcttgacatgacta |
63 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
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| T |
31883966 |
ctattctttttcaactttctcccaatcatctccaacattttcttctcatgcttgacaggacta |
31884028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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