View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0328_low_21 (Length: 250)
Name: NF0328_low_21
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0328_low_21 |
 | |
|
| [»] scaffold0057 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 13731436 - 13731675
Alignment:
| Q |
1 |
tcatctgaatctcccacacccatcactcctccacctaaacctcacagaattcatcctcttaacactcattccatggccactagagggaaacttggggttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13731436 |
tcatctgaatctcccacacccatcactcctccacctaaacctcacagaattcatcctcttaacactcattccatggccactagagggaaacttggggttg |
13731535 |
T |
|
| Q |
101 |
ttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggcatcttgctatgaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13731536 |
ttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggcatcttgctatgaaaac |
13731635 |
T |
|
| Q |
201 |
tgagttcaatgccttgttacacaacaacacttggtctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13731636 |
tgagttcaatgccttgttacacaacaacacttggtctctg |
13731675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 25229240 - 25229001
Alignment:
| Q |
1 |
tcatctgaatctcccacacccatcactcctccacctaaacctcacagaattcatcctcttaacactcattccatggccactagagggaaacttggggttg |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25229240 |
tcatctgaatctctcacacccatcactcctccacctaaacctcacagaattaatcctcttaatactcattccatggccactagagggaaacttggggttg |
25229141 |
T |
|
| Q |
101 |
ttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggcatcttgctatgaaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25229140 |
ttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggcatcttgctatgaaaac |
25229041 |
T |
|
| Q |
201 |
tgagttcaatgccttgttacacaacaacacttggtctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25229040 |
tgagttcaatgccttgttacacaacaacacttggtctctg |
25229001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 25238898 - 25238833
Alignment:
| Q |
175 |
cctaattggcatcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25238898 |
cctaattggcatcttgctatgaaaactgagttcaatgccttgttacacaacaacacttggtctctg |
25238833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0057 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0057
Description:
Target: scaffold0057; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 55180 - 54955
Alignment:
| Q |
16 |
acacccatcactcctccacctaaacctcacagaattcatcctctt-aacactcattccatggccactagagggaaacttggggttgttcagcctagaaaa |
114 |
Q |
| |
|
||||| ||||| || ||||| ||||| ||||||||| |||| | | |||||||||| |||||| |||||||| || ||||| |||||||||||||| |
|
|
| T |
55180 |
acacctatcaccccaccacccaaaccacacagaatttatccccctcaacactcattacatggctactagaggaaagcttggcattgttcagcctagaccg |
55081 |
T |
|
| Q |
115 |
caacctacacttcttcttactcatcttgaacccaccagtcacaaacaagctttattgaatcctaattggcatcttgctatgaaaactgagttcaatgcct |
214 |
Q |
| |
|
| ||||| |||||| |||||| |||||||| || ||||| |||||||| |||||| | | || ||||||||||||| | ||||||||| ||||| | |
|
|
| T |
55080 |
aaccctactcttctttttactcgccttgaacctactagtcataaacaagccttattggaccacaactggcatcttgctacgcaaactgagtaaaatgcat |
54981 |
T |
|
| Q |
215 |
tgttacacaacaacacttggtctctg |
240 |
Q |
| |
|
||||| | || || || ||||||||| |
|
|
| T |
54980 |
tgttaaataataatacatggtctctg |
54955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 35293065 - 35293157
Alignment:
| Q |
73 |
atggccactagagggaaacttggggttgttcagcctagaaaacaacctacacttcttcttactcatcttgaacccaccagtcacaaacaagct |
165 |
Q |
| |
|
|||||||||||||| |||| ||| ||||||| | |||| ||||||||||| ||||| ||||||||||| || || ||| |||| |||||| |
|
|
| T |
35293065 |
atggccactagaggcaaacgtggaattgttcaacagagaattcaacctacactacttctaactcatcttgagcctacaagttacaagcaagct |
35293157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University