View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0328_low_23 (Length: 240)
Name: NF0328_low_23
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0328_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 49769491 - 49769601
Alignment:
| Q |
11 |
cacagagaacatcagcttacataagtcaaactgatttacacataggagaactgacagtgagagaaacattggccttttcagcaaggtgtcaaggaatagg |
110 |
Q |
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| T |
49769491 |
cacagagaacatcagcttacataagtcaaactgatttacacataggagaactgacagtgagagaaacattggccttttcagcaaggtgtcaaggaatagg |
49769590 |
T |
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| Q |
111 |
aactcgttatg |
121 |
Q |
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| T |
49769591 |
aactcgttatg |
49769601 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 2152644 - 2152551
Alignment:
| Q |
11 |
cacagagaacatcagcttacataagtcaaactgatttacacataggagaactgacagtgagagaaacattggccttttcagcaaggtgtcaagg |
104 |
Q |
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| T |
2152644 |
cacaaagaacatcagcttatgtaagtcaatatgataatcacattggagaaatgactgtgagagaaacactggctttctcagcaagatgtcaagg |
2152551 |
T |
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