View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0328_low_3 (Length: 501)
Name: NF0328_low_3
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0328_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 81 - 494
Target Start/End: Complemental strand, 44518666 - 44518255
Alignment:
| Q |
81 |
aagaagttgacatttgcatgatcatgtattcaattcacgctatcgaagtgggaagatctttaacgtgtaatctagaagtactgctgcaaatattctttaa |
180 |
Q |
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| T |
44518666 |
aagaagttggcatttgcataattatgaattcaattcacgctatcaaaataagaacatctttaacgtgtaatctagaagcactactgcaaatattctttaa |
44518567 |
T |
|
| Q |
181 |
gtcttgagatatgtcatgattcactcagataaatatttttcctatatataagaaaaagactaaaatacaccatttgtccttaatc----nnnnnnnnnnn |
276 |
Q |
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| T |
44518566 |
gttttgagatccgtcataattcactcacctaaatatttttactatatataagaaaaagactaaaatacatcatttgtccttaatcttttttttttttttt |
44518467 |
T |
|
| Q |
277 |
ccatttcaatcgtttatctttttaaatattgacactcttatacttttcactaaaaattgtcnnnnnnnnnnnnnnnnnnnctagacatctatatcatcta |
376 |
Q |
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| T |
44518466 |
ccatttcaatcgtttatctttttaaatattgacactcttatacttttcactaaaaattgtc------aacaaaaaaaaaactagacatctatatcatctg |
44518373 |
T |
|
| Q |
377 |
caccgtcttcatcaaaaatccagatcttcaataaaaactcaactttaaaatcatgtcaaatcttcgtcaccaacaacatcaaatcccataatnnnnnnnc |
476 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
44518372 |
caccatcttcataaaaaatccagatcttcaataaaaactcaactttaaaaacatgtcaaatcttcgtcaccaacaacatcaaatccaataattaaaaaac |
44518273 |
T |
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| Q |
477 |
tcatatttagtataatct |
494 |
Q |
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|||||||||||||||||| |
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| T |
44518272 |
tcatatttagtataatct |
44518255 |
T |
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