View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0328_low_8 (Length: 359)
Name: NF0328_low_8
Description: NF0328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0328_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 62 - 346
Target Start/End: Original strand, 16176668 - 16176952
Alignment:
Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
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T |
16176668 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcatcatgttcatactac |
16176767 |
T |
 |
Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaagatg |
261 |
Q |
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T |
16176768 |
aacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaagatg |
16176867 |
T |
 |
Q |
262 |
aatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaactgtgttgatgcctttggtatgattctttgtct |
346 |
Q |
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T |
16176868 |
aatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaattgtgtcgatgcctttggtatgattctttgtct |
16176952 |
T |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 62 - 329
Target Start/End: Original strand, 16154947 - 16155217
Alignment:
Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
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T |
16154947 |
cacaataattgttggtagttgtgcaaaaatagattgtgcaactcattgtcaagcatatggaaaaggtgttgctgttttaggatcctcatgttcattctac |
16155046 |
T |
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Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggatt---aacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaag |
258 |
Q |
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T |
16155047 |
aacttatgcacttgtagttatgatcagccaccaccagcattatcatcaccaactggtcattgtgatattgggatgggaatttgcactgatgactgtctaa |
16155146 |
T |
 |
Q |
259 |
atgaatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaactgtgttgatgccttt |
329 |
Q |
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T |
16155147 |
gtgattgttgcaacaaaaagtgtgttagtagatatagtaaaacaggtgctggggtctgtgttaatgccttt |
16155217 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 62 - 343
Target Start/End: Original strand, 16146315 - 16146596
Alignment:
Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
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T |
16146315 |
cacaaaaattgttggtagctgtgcaagacaagattgttctgaacactgtaattcctttgcaagaggcgttcgtgttttaggatcgtcatgttcattctat |
16146414 |
T |
 |
Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggattaacaccacctggtaattgtattattgggatgggaatttgcaatggtgactgtcaagatg |
261 |
Q |
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T |
16146415 |
aacttatgcacttgtacttatgatcagccaccacctggattgacaccacctggtaactgtggtattgggatgggaatttgcactggtgactgtcaagatg |
16146514 |
T |
 |
Q |
262 |
aatgttgcaacaaaaggtgtgttagtcgatatagtaaaacgggttctgggaactgtgttgatgcctttggtatgattctttg |
343 |
Q |
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T |
16146515 |
attgttgcaacaaaaggtgtgttagtagatatagtaaaacgggtgttgggaagtgtgttgatgcccttgatatgagtctttg |
16146596 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 203
Target Start/End: Original strand, 16271107 - 16271248
Alignment:
Q |
62 |
cacaaaaattgttggtagttgtgcaaaagaagattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactac |
161 |
Q |
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|||||||||| | ||||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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T |
16271107 |
cacaaaaattataggtagatgtgataaagcaaattgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcttcatgttcattctac |
16271206 |
T |
 |
Q |
162 |
aacttatgcacttgtacttttgataagccaccaccaggatta |
203 |
Q |
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T |
16271207 |
aacttatgcacctgtgcttttgatcggtctccaccaggatta |
16271248 |
T |
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 185
Target Start/End: Original strand, 16289243 - 16289334
Alignment:
Q |
94 |
attgtgcaactcattgtcaatcatatgcaaaaggtgttgctgttttaggatcctcatgttcatactacaacttatgcacttgtacttttgat |
185 |
Q |
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T |
16289243 |
attgtgcagttcattgtcaatcatatgcaaaagatgttgctgttttaggatcatcatgttcattctacgacttatgcatttgtgcttttgat |
16289334 |
T |
 |
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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