View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0329_high_10 (Length: 241)
Name: NF0329_high_10
Description: NF0329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0329_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 10299293 - 10299436
Alignment:
| Q |
16 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggca |
115 |
Q |
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| T |
10299293 |
gagcagagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatgtttccattcatgtggca |
10299392 |
T |
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| Q |
116 |
tggattttttccaccactgctgtggaaacaattagaccttttaa |
159 |
Q |
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| T |
10299393 |
tggattttttccaccactgctgtggaaacaattagaccttttaa |
10299436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 40204276 - 40204141
Alignment:
| Q |
21 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
120 |
Q |
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| T |
40204276 |
gagagccaccatatttgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgctattcatgtgacatggat |
40204177 |
T |
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| Q |
121 |
tttttccaccactgctgtggaaacaattagaccttt |
156 |
Q |
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| T |
40204176 |
cttttccaccacttctatggaaacaatttgaccttt |
40204141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 40208409 - 40208274
Alignment:
| Q |
21 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
120 |
Q |
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| T |
40208409 |
gagagccaccacaattgatcaaaatctggaatttgagagaatataatttgcactgcaccaaatgaaatcatgtaaatattgcttttcatgtgacatggat |
40208310 |
T |
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| Q |
121 |
tttttccaccactgctgtggaaacaattagaccttt |
156 |
Q |
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| T |
40208309 |
cttttccaccacttctatggaaacaatttgaccttt |
40208274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 156
Target Start/End: Complemental strand, 40200775 - 40200640
Alignment:
| Q |
21 |
gagagccaccataactgatcaaagtcaggaatttgagagaaaaagatctccacaataccaaatgaaatcatgtaaatatttccattcatgtggcatggat |
120 |
Q |
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| T |
40200775 |
gagagccaccataattgatcaaaatctggaatttgagagaatataatttgtactgcaccaaatgaaatcatgtaaatattgctgttcatgtgacatggat |
40200676 |
T |
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| Q |
121 |
tttttccaccactgctgtggaaacaattagaccttt |
156 |
Q |
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| T |
40200675 |
cttttcccccacttctatggaaacaatttgaccttt |
40200640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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